XLOC_008916 (ppm1lb)


Basic Information

Item Value
gene id XLOC_008916
gene name ppm1lb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1630815 ~ 1651766 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017609
ACCGAGCTGAGTGCACGCgccatgcgcgcacacacagaacACCTGCACGCAGTGCTGCCGTGTCGGAGGACCAAACGAAAGCAATTCAGCACCTTTGACGGGAAAGCCGTCGTATACGCGTGTTATTAATAGGATATGCTGATGATTTCGGAAGCTGAATAAGCGAGTATTGATGCGGTGTGAGGAGTGCAGGAGCCTCTGATGTGCAGCCCTCATTAGTCCAGCTTCTccgtgtgcgcgcgtgtgtgtggaCAGGATGAGTCCGCTGGCTCTGCTGGCCAGGACCCTGCGCTGTGTGCTGCTGCGGCCCGGGGGTCTGCTGCTGCTGGGTTTCAGTCTGGCGCTCTGGAGCTTCATCTTCCACACCGGCGAGCTGCAGGGACTGCTGCAGATGCTGAGGGGCCGGGCGGCGGGGCCGGGGCTGCCGGTGCCGCTGCTGCCGCGGGACGGGCCGCCGGAGGAGCAGCTTTCCAACACCTGGCAGCTCCGGAGCGGCGCCGCGGCCGTCTACTCCATCCAGGGCCGCAGAGATCACATGGAGGACCGCTTCGACATCCTCACCGACACTCGCAACCGCAGCCACCCCGCCATATTCAGCATCTACGACGGACACGGAGGAGAGGCAGCAGCGGAGTACGCTAAGGCTCATCTGCCCATCATGTTGCGTCAGCAGCTCCAGCGCTACGAGCGGCAGAAGGAGAACAGCGCGGTCAGCCGGCAGGCCATCCTCCGACAGCAGATCCTCAACATGGACCGAGAGATTCTGGAGAAACTGACGGCATCCTATGATGAAGCAGGAACCACGTGTCTGGTGGCTCTGCTGTCGGAGAAAGAGCTCACCGTAGCAAATGTCGGAGATTCACGAGCAGTTCTGTGTGATAAAGATGGAAACGCCATCCCGCTGTCACATGACCACAAACCCTACCAGCTCAAAGAGCGCAAGAGGATCAAGAAGGCAGGAGGCTTCATCAGCTTCAGTGGCTCGTGGCGGGTTCAGGGCGTCCTCTCCATGTCCCGCTCTCTGGGAGATTTTCCGCTCAAGAAGCTGAAGGTGCTGATCCCCGACCCCGACCTCATGACCTTTGACCTGGACACACTTCAGCCGCAGTTCATGATTCTGGCGTCAGACGGCCTCTGGGACACCTTCAGCAACGAGGAGGCCGTGCACTTCATTAAAGAGCGCCTGGACGAGCCTCACTTCGGCGCTAAAAGCATCGTCCTGCAGTCGTTCTACCGCGGATGCCCAGACAACATCACCGTCATGGTGGTCAAGTTTAAGAAGAGAGCCGGTAATAAAGACTAATAATGATGTCATGCAAGCAAACGAGTGACTGGATGAATGAAAAAaggggagagttcacccaaatattcttaatgttttaaaccattatgagtttctaTTATCAGATGAACACAATAGAACATGTGAAGTGTTTTACTAGATATGAGATAAGATATGCTTCCAAATAAACTTGAGTAAAAATGAGTTCCCGCTaaaattaaggagaaaaaaattgaaagtttttgttttacagtgtaaatgaacAACATAGGCTCAGTCTGAAAACAGAGCCCTGTAAACATTCATGGAGATCACGAATGATGTTGtcagaggaacgtatggctgcatttcatcttcaaAATGAACGCTATGAGGCGTTGCTTTTCGCTCTACCAggtgaccgcttacctccatgtggacggctgtCCCACTGT

Function

symbol description
ppm1lb Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PPM1L (protein phosphatase, Mg2+/Mn2+ dependent 1L).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-136 Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PPM1L (protein phosphatase, Mg2+/Mn2+ dependent 1L).

Ensembl:

ensembl_id ENSDARG00000089641

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017609 True 1716 mRNA 0.54 4 1630815 1651766

Neighbor

gene id symbol gene type direction distance location
XLOC_008915 kpna4 coding downstream 8330 1596508 ~ 1622485 (-)
XLOC_008914 nnr coding downstream 39957 1589813 ~ 1590858 (-)
XLOC_008913 trim59 coding downstream 46678 1574356 ~ 1584137 (-)
XLOC_008912 ift80 coding downstream 96557 1494493 ~ 1534258 (-)
XLOC_008911 si:dkeyp-97b10.3 coding downstream 145729 1452834 ~ 1485086 (-)
XLOC_008917 sptssb coding upstream 28196 1679962 ~ 1687204 (-)
XLOC_008918 rabgef1l coding upstream 66902 1718668 ~ 1733259 (-)
XLOC_008919 stx1a coding upstream 82678 1734444 ~ 1746963 (-)
XLOC_008920 bud23 coding upstream 98077 1749843 ~ 1765137 (-)
XLOC_008921 mmp28 coding upstream 127007 1778773 ~ 1822548 (-)
XLOC_008910 LO017713.1 non-coding downstream 308909 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 487746 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 622456 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 637228 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 729936 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 614203 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 671900 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 947038 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 966513 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 1084617 2736383 ~ 2736498 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_04748399_04769770 NA coding CI01000092 null 4747852 ~ 4770407 (+)