XLOC_008917 (sptssb)


Basic Information

Item Value
gene id XLOC_008917
gene name sptssb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 1679962 ~ 1687204 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017610
CCGAGATGTGGGAGTGGTGATTGCTGTGTTTATAACTGGTAGAGCAGCTTTGCAGCGGGCTCCACTGTCATCGCGTCCACTCCACACTGCAGCTTCGCCGCGGAGATCGGCGGTGTTTCTGCCTCCGCATGGACATGAAGAACATGAGAGAGTACATGAGCTGGCTCTACTACCAGTATCTGCTCATCACTGGGATCTATGTGCTGGAGCCGTGGGAGCAGTCTATCTTCAACACCGTGCTCTTCACTATGGTGGCCATGGTCATTTACACCTCCTATGTGTTTGTGCCCATCCACGTGCGGCTGGCGCTGGAGTTCTTCTGTGAGCTGGTCGGAGGACAGCCCGAAAGCACAGTGGCCCTCATGACCTGAAGATGCGGCAGCGTTTCGATCCATCACTCAGGAAAGAAAGCAGAAGCCAGATGAAATGAAAAGGTCTTTTTGCAAAAGCCCCTTCAAGTCTTCCACGTTTGACTCGCTTCCTGCTCCATCCTGGGAGTTTGCTATTCAATGGATTTTTAATGGGTGGTGCTTCGTATGGGACGTCTGCCGCAGACTGACTCAATGGCAATATTGAGATTAACAGGGAAGTTCActcaaataatgaaaatgtactctctatttactttccctcaagGGGTTCCAAAGCTTTAAGAGTTTCTTCTCGTTAAGAgtttactttcttctgttgaacactaaagatattgtgaagaatgctggaaaaccattgacttccatagtaggacaaacaaataccatggaagtcaatggtcagaGGTTTCCAGGATTATTTACAATGTCTCTCTTAGTGTATAACTGAAGAAAAGAGTGAAGTAAATGATGGTAGAAGTTTCATTTCTGAGTGAACGATCCCTGTAATGTCCTTGTCATCACTGGTTGATAATAAGGAAATCGTTATTCATAGTCATCTTCACACAGTTCGtgtaaacacatttgtttttattgtagccGCTTCAGGTTTGGTTTCTGTGCCGCCTTTGCAGTGTAAAGAAGCCTTATGACTCTGTATTAGGAGTCCTTGATCTGACTGAGATATGCTGATTTTATTTCCCTCACAAGgcatttattattacatatacatttttataattctttattttataatcatCTATGCAATGTGTGACCGGTGCACATGAAGATGCAGCACATTCTCAATGCTGACACTTTTACAATCCCACCCACTGCAGCGTGGAGGTGTGTGAAAACAGTATACCGTCACTCGAtcattttgacttgtttttacCCTCAAGAACGTTCCTCGTTTGAAGTATACCAGGACCTTTAGTGAGACGTGATTGGTTGAAAACAGCGCACACGCTGAGGTCATAGTGCGAACACCGATTGAATCATCCACATGACCACACTGTACTCAGAGTTTTATACACTCTACAGAAAGTTTGGGCTTCAGTCACCTGACACTGCATTTTTGTGTGGACAAACGGTGAAACCGCATAAAAAAGTGCGACTCTGAAAACACCCGTGTTCATGTGGACAGGGCCTGAGCATCAACATGTGACGAATCTGCAGTGAGAATGTTGAAAGATATGGTGAAGTTCATTTATAAAcgaatttcgagaggatcacgtgcttagctgttccaactttagctaattaTCCTACTAGATGTTCTTTAACTCTCATCTCGAAATCTTCGTCTTGAAGAtaccccccccacccaaccctactttccctcctttcaaacggtgGCCATTGATTagagctgttgcctcacagcaagaatgcccctggtttaatccCCTTccaaaccaggcaacatttctgtgcggagttttgctcgttctccccgtgatcgCGTGGGAGTcgtccggtttcctcccacagtccaaaaacaagccccctaaacaattaatccaaaatattttagccgaactctgagtacaccttctcagcatccatatctgacacttagctacaataagcaagagggggagtcatcgagatctacctgagctcaaactcccctctcgccttgcaacgggagggagcccagggctcgaggatcttataagctcagggctctttcccgggacagcacgccaaacaagcgtTCTTATCAATcataagctaagtgtgaactcttgaaagcaggTTTAACGTGCGCTGCACTCGATCACAGCTCTTTGAATGCTCGTCATCCATCGCTCCTGCCGTCTGATATAGAGTTGCATCAGTTGTTTGCATGACATCTGGAGGTTTTCATCAAATTATTGGCACTTGAATgttcattgtaatgttttcaacTACTAATAAGAATGTAGTTATGTTAGCCGAGAGGCTGAACACATTTTAAATCCTGCTCACAGATTTCCCAGCtaatctagagcagtggttctcaaagtgggggtcgggaccccctggggggtcacgggacaatgacaaggggtcacTTGGGGatatccaaaactcaaataaatgttattaaactattaaaattaccatattttattcataaccgacCGAAtataaagaaacaacaacataaaaataacaatcagccatcagcctttaattttcaaagcaaaatgtaattaaatccataaatgactttaaaaaacattatctggctaatagactgttgcatttttgtgttgtcaataagctcatgtttatatttgcctatagttgtctgcaacgtttacatatttacagtacaaacaccttgaaaaatgggggtcgcgagccactgatatgattatttttggggtcacaggctgaaaagtttgggaacccctgatctagagcaCTGTTTTGCTGAGTTATGAATGGTTATCAAAGTTTGTTTCAGCTTTAAgtgatgtttttgtatttttcttaacTGTCAATGTGACGCCATGAGATTCCTCTTGATTTGATGACAACTTTTACATGGGTATAAtgtatttttgagaaataaaagaaTTCGCCATA
>TCONS_00017611
CCGAGATGTGGGAGTGGTGATTGCTGTGTTTATAACTGGTAGAGCAGCTTTGCAGCGGGCTCCACTGTCATCGCGTCCACTCCACACTGCAGCTTCGCCGCGGAGGTGAGTTACTATTTACTCTGTTACCCCCTGCGGACCTGACAGCGCAGGAGTTTTCATTTATCATCCAGCTTCAACACAACTGTAAGACTAAACGACCCATGATAGCATCGCGGAGACATCTAGGCTATTTGACgtttgtgtttacatctggagGACTTTAAGATCGGCGGTGTTTCTGCCTCCGCATGGACATGAAGAACATGAGAGAGTACATGAGCTGGCTCTACTACCAGTATCTGCTCATCACTGGGATCTATGTGCTGGAGCCGTGGGAGCAGTCTATCTTCAACACCGTGCTCTTCACTATGGTGGCCATGGTCATTTACACCTCCTATGTGTTTGTGCCCATCCACGTGCGGCTGGCGCTGGAGTTCTTCTGTGAGCTGGTCGGAGGACAGCCCGAAAGCACAGTGGCCCTCATGACCTGAAGATGCGGCAGCGTTTCGATCCATCACTCAGGAAAGAAAGCAGAAGCCAGATGAAATGAAAAGGTCTTTTTGCAAAAGCCCCTTCAAGTCTTCCACGTTTGACTCGCTTCCTGCTCCATCCTGGGAGTTTGCTATTCAATGGATTTTTAATGGGTGGTGCTTCGTATGGGACGTCTGCCGCAGACTGACTCAATGGCAATATTGAGATTAACAGGGAAGTTCActcaaataatgaaaatgtactctctatttactttccctcaagGGGTTCCAAAGCTTTAAGAGTTTCTTCTCGTTAAGAgtttactttcttctgttgaacactaaagatattgtgaagaatgctggaaaaccattgacttccatagtaggacaaacaaataccatggaagtcaatggtcagaGGTTTCCAGGATTATTTACAATGTCTCTCTTAGTGTATAACTGAAGAAAAGAGTGAAGTAAATGATGGTAGAAGTTTCATTTCTGAGTGAACGATCCCTGTAATGTCCTTGTCATCACTGGTTGATAATAAGGAAATCGTTATTCATAGTCATCTTCACACAGTTCGtgtaaacacatttgtttttattgtagccGCTTCAGGTTTGGTTTCTGTGCCGCCTTTGCAGTGTAAAGAAGCCTTATGACTCTGTATTAGGAGTCCTTGATCTGACTGAGATATGCTGATTTTATTTCCCTCACAAGgcatttattattacatatacatttttataattctttattttataatcatCTATGCAATGTGTGACCGGTGCACATGAAGATGCAGCACATTCTCAATGCTGACACTTTTACAATCCCACCCACTGCAGCGTGGAGGTGTGTGAAAACAGTATACCGTCACTCGAtcattttgacttgtttttacCCTCAAGAACGTTCCTCGTTTGAAGTATACCAGGACCTTTAGTGAGACGTGATTGGTTGAAAACAGCGCACACGCTGAGGTCATAGTGCGAACACCGATTGAATCATCCACATGACCACACTGTACTCAGAGTTTTATACACTCTACAGAAAGTTTGGGCTTCAGTCACCTGACACTGCATTTTTGTGTGGACAAACGGTGAAACCGCATAAAAAAGTGCGACTCTGAAAACACCCGTGTTCATGTGGACAGGGCCTGAGCATCAACATGTGACGAATCTGCAGTGAGAATGTTGAAAGATATGGTGAAGTTCATTTATAAAcgaatttcgagaggatcacgtgcttagctgttccaactttagctaattaTCCTACTAGATGTTCTTTAACTCTCATCTCGAAATCTTCGTCTTGAAGAtaccccccccacccaaccctactttccctcctttcaaacggtgGCCATTGATTagagctgttgcctcacagcaagaatgcccctggtttaatccCCTTccaaaccaggcaacatttctgtgcggagttttgctcgttctccccgtgatcgCGTGGGAGTcgtccggtttcctcccacagtccaaaaacaagccccctaaacaattaatccaaaatattttagccgaactctgagtacaccttctcagcatccatatctgacacttagctacaataagcaagagggggagtcatcgagatctacctgagctcaaactcccctctcgccttgcaacgggagggagcccagggctcgaggatcttataagctcagggctctttcccgggacagcacgccaaacaagcgtTCTTATCAATcataagctaagtgtgaactcttgaaagcaggTTTAACGTGCGCTGCACTCGATCACAGCTCTTTGAATGCTCGTCATCCATCGCTCCTGCCGTCTGATATAGAGTTGCATCAGTTGTTTGCATGACATCTGGAGGTTTTCATCAAATTATTGGCACTTGAATgttcattgtaatgttttcaacTACTAATAAGAATGTAGTTATGTTAGCCGAGAGGCTGAACACATTTTAAATCCTGCTCACAGATTTCCCAGCtaatctagagcagtggttctcaaagtgggggtcgggaccccctggggggtcacgggacaatgacaaggggtcacTTGGGGatatccaaaactcaaataaatgttattaaactattaaaattaccatattttattcataaccgacCGAAtataaagaaacaacaacataaaaataacaatcagccatcagcctttaattttcaaagcaaaatgtaattaaatccataaatgactttaaaaaacattatctggctaatagactgttgcatttttgtgttgtcaataagctcatgtttatatttgcctatagttgtctgcaacgtttacatatttacagtacaaacaccttgaaaaatgggggtcgcgagccactgatatgattatttttggggtcacaggctgaaaagtttgggaacccctgatctagagcaCTGTTTTGCTGAGTTATGAATGGTTATCAAAGTTTGTTTCAGCTTTAAgtgatgtttttgtatttttcttaacTGTCAATGTGACGCCATGAGATTCCTCTTGATTTGATGACAACTTTTACATGGGTATAAtgtatttttgagaaataaaagaaTTCGCC

Function

symbol description
sptssb Predicted to contribute to serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process; endoplasmic reticulum organization; and regulation of serine C-palmitoyltransferase activity. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of serine C-palmitoyltransferase complex. Orthologous to human SPTSSB (serine palmitoyltransferase small subunit B).

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0006629 lipid metabolic process biological_process
GO:1904220 regulation of serine C-palmitoyltransferase activity biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0006665 sphingolipid metabolic process biological_process
GO:0007029 endoplasmic reticulum organization biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0017059 serine C-palmitoyltransferase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004758 serine C-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-6887 Predicted to contribute to serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process; endoplasmic reticulum organization; and regulation of serine C-palmitoyltransferase activity. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of serine C-palmitoyltransferase complex. Orthologous to human SPTSSB (serine palmitoyltransferase small subunit B).

Ensembl:

ensembl_id ENSDARG00000091658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017610 False 2948 mRNA 0.43 2 1679962 1687204
TCONS_00017611 True 3107 mRNA 0.43 2 1679965 1687204

Neighbor

gene id symbol gene type direction distance location
XLOC_008916 ppm1lb coding downstream 28196 1630815 ~ 1651766 (-)
XLOC_008915 kpna4 coding downstream 57477 1596508 ~ 1622485 (-)
XLOC_008914 nnr coding downstream 89104 1589813 ~ 1590858 (-)
XLOC_008913 trim59 coding downstream 95825 1574356 ~ 1584137 (-)
XLOC_008912 ift80 coding downstream 145704 1494493 ~ 1534258 (-)
XLOC_008918 rabgef1l coding upstream 31464 1718668 ~ 1733259 (-)
XLOC_008919 stx1a coding upstream 47240 1734444 ~ 1746963 (-)
XLOC_008920 bud23 coding upstream 62639 1749843 ~ 1765137 (-)
XLOC_008921 mmp28 coding upstream 91569 1778773 ~ 1822548 (-)
XLOC_008922 taf15 coding upstream 137968 1825172 ~ 1844048 (-)
XLOC_008910 LO017713.1 non-coding downstream 358056 1321790 ~ 1321906 (-)
XLOC_008908 NA non-coding downstream 536893 1140445 ~ 1143069 (-)
XLOC_008903 NA non-coding downstream 671603 1007600 ~ 1008359 (-)
XLOC_008902 NA non-coding downstream 686375 986144 ~ 993587 (-)
XLOC_008899 NA non-coding downstream 779083 899089 ~ 900879 (-)
XLOC_008927 AL954387.2 non-coding upstream 578765 2265969 ~ 2266083 (-)
XLOC_008928 NA non-coding upstream 636462 2323666 ~ 2328284 (-)
XLOC_008932 NA non-coding upstream 911600 2598804 ~ 2611170 (-)
XLOC_008933 NA non-coding upstream 931075 2618279 ~ 2625928 (-)
XLOC_008940 CABZ01086049.1 non-coding upstream 1049179 2736383 ~ 2736498 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location