RNA id: XM_043254609.1


Basic Information

Item Value
RNA id XM_043254609.1
length 1522
RNA type mRNA
GC content 0.55
exon number 4
gene id nkx2.3
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15752636 ~ 15755128 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCCGGTAACGTGACATCACCGGGCAGAAGAACTGCCTTGTGCTGCCGGACTCCAAGAAAAACACACGACAGTTTAACACCGACGAGTGGCGGTCCTCACCTCTCTTCATGCAAATCAAGCAGCCGTGACAAAATGGGAGATTAATCGACACATTTAGCGCCCGATGATGCTTCCGAGCCCGGTCACATCAACGCCGTTTTCTGTGAAGGATATACTGAAACTGGAGCAGCAATCTCGCCACCTTCAATCTCTGCATCCCGCGCAGCACCACGCGCAACTGCATCCGGAACTGCACGAGAGATTCCAGGCGCCGTCATCCTGCTTTCTCGGAGGTGGAGACAGCTCCGGCTTCTCAGACAACGACGAGAAGATGTCTTTTCTGAACTCTCTCTCCATGCAGGACAGCTTAGCGGAGAGCAGCCTTTCGCCTCCGATGTTTGTCCACCCGGCCCTGGGACACGTCGACACTAAACTTGAAGATGAACTTGAGGAGCACGAAACGAAGAGCTGCGGCGCCATCCTCAGATCCCCGGAGTGCGAGGGAGAGGCGCACTCGGACACGGAGCGGGCGCAGCGGCAGAGGACGCGCAGGAAGCCGCGGGTTCTCTTCAGCCAGGCGCAGGTCTTCGAGCTCGAGCGGCGCTTCAAGCAGCAGCGCTACTTATCGGCTCCCGAGAGGGAGCACCTGGCCAGTACCCTGAAACTGACGTCGACGCAGGTCAAAATCTGGTTCCAGAACCGCAGATACAAGTGCAAGCGACAGCGTCAGGACAAAACACTGGAAATGGCGGGACACCATcacccgccgccgccgccgcccaGGAGGGTGGCGGTGCCGGTGCTAGTCCGGGACGGCAAACCCTGCTTAACGGGATCGCAGAGCTACAACGCCACTTACGCGGTGAACCCGGGCCCGTACACGTATAACGGCTACTCGTCTTATAACAACGCCGCCGCGTACACAAACCCTTACAGCTGTGCATACCCCAGCCTCCCTCCTCTCCCAGCGAACACATCCACTAACGCGCTGATGAGCATGAGTCTGAACAACCTCGGAACGTATTCCCAACCCCAGACAACGCAAGGAACGCCCGTGTCCGCGTGCCAAGGGACCCTGCAGGGTATTCGGGCATGGTAGCGCCATTGCAACCCGCTCGCCTGTATATAAATGGCAACTTTACAATATTAGCAAACAGTTAGCCACGTGTTATAGGCCTAGGGTCCCGTATAGTCTACCTTTTCAGTATAAACTTGAGTGAATTTCTTCTCGCAACTCTTCCGTGACGGCTGAACGAGTGCACACGAATAATCGTGGCAATTTTTCGACCACCTATTCGGACGACACACTCCCTGTACATTTGCCGGTCTCGTTTCAGACCGGCACTATCAGAGACAGCCGTTTTCTCATTCGTTGCACTTATCCATGAAAATGTCATTGCCTAAAATGTTAACGAATACTGACAAcggtgtgtgtgattttgtgcaAACctacattgtaaaaataaaaacagtaaacttta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139369 lncRNA downstream 31820 15686413 ~ 15720816 (-) False zgc:123010
TU139297 lncRNA downstream 112003 15640275 ~ 15640633 (-) True G94145
TU139282 lncRNA downstream 146923 15604687 ~ 15605713 (-) True G94132
TU139196 lncRNA downstream 468581 15279407 ~ 15284055 (-) True G94063
TU139177 lncRNA downstream 504052 15244531 ~ 15248584 (-) False col9a1b
TU139381 lncRNA upstream 7423 15762551 ~ 15762843 (-) True G94199
TU139382 lncRNA upstream 8296 15763424 ~ 15763745 (-) True G94200
TU139407 lncRNA upstream 122399 15877527 ~ 15885222 (-) False G94216
TU139429 lncRNA upstream 152142 15907270 ~ 15907491 (-) True G94232
TU139455 lncRNA upstream 211886 15967014 ~ 15967343 (-) True G94247
XM_043254746.1 mRNA downstream 4176 15743917 ~ 15748460 (-) True nkx3.3
XM_043256153.1 mRNA downstream 42488 15701427 ~ 15710148 (-) True pyroxd2
XM_043254602.1 mRNA downstream 52152 15686270 ~ 15700484 (-) True zgc:123010
XM_043254690.1 mRNA downstream 71242 15654465 ~ 15681394 (-) True loxl4
XM_043254712.1 mRNA downstream 120066 15609866 ~ 15632570 (-) True crtac1b
XM_043255331.1 mRNA upstream 19649 15774777 ~ 15793540 (-) False LOC122356531
XM_043255328.1 mRNA upstream 19649 15774777 ~ 15793537 (-) False LOC122356531
XM_043255329.1 mRNA upstream 19649 15774777 ~ 15793537 (-) True LOC122356531
XM_043255330.1 mRNA upstream 23320 15778448 ~ 15793538 (-) False LOC122356531
XM_043255688.1 mRNA upstream 116947 15872075 ~ 15876837 (-) False st3gal7
TU139299 other downstream 110133 15642031 ~ 15642503 (-) True G94147
TU139278 other downstream 168719 15564617 ~ 15583917 (-) True G94128
TU139178 other downstream 499355 15250575 ~ 15253281 (-) False col9a1b
TU139176 other downstream 509839 15240750 ~ 15242797 (-) False col9a1b
TU138950 other downstream 1588288 14160323 ~ 14164348 (-) False srsf5a
XR_006252348.1 other upstream 22351 15777479 ~ 15793538 (-) False LOC122356531
TU139406 other upstream 122399 15877527 ~ 15885222 (-) True G94216
XR_006252284.1 other upstream 256674 16011802 ~ 16162753 (-) False pcdh15a
XR_006252287.1 other upstream 259189 16014317 ~ 16162753 (-) False pcdh15a
XR_006252286.1 other upstream 259189 16014317 ~ 16162753 (-) False pcdh15a

Expression Profile