RNA id: XM_043254712.1


Basic Information

Item Value
RNA id XM_043254712.1
length 4608
RNA type mRNA
GC content 0.43
exon number 15
gene id crtac1b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15609866 ~ 15632570 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCAGCATGGATATTACTGCTCACTGTGGGTGTTTCTGTCCTGGGACTGTCCTGGGGTCAGCGGACTGAACCCATGTTTGCTTCAGTAACTCAGAATGTTTTCCCGCCGGACTATGATAATAACCCCACACAGCTCAACTACGGCGTGGCAGTGACCGACGTGGATGGAGACGGAGATCTGGAGATGTTTGTGACGGGctACAATGGCCCAAATCTGGTGCTGAAATACGACAAGTTTAAGAAGAGGCTTGTTAACATCGCGGTTGACAACCGCAGTTCTCCGTATTATGCACTGAGAGATCGACAGGGCAATGCCATCGGAGTGACAGCATGTGACATAGATGGTGACGGCAAAGAGGAAATTTACGTCCTCAACACTAATAACGCCTTCTCAGGGAGAGCAACGTACACCGACAAGCTCTTTAAGTTTCGTAATGGGCGGTTCGAGGATCTCCTGAACGATGACATAAATGAACATAGAGACGTCGCCAATCGCGTGGCTGGCCGGTCAGTCGCCTGTGTGGACAGAAAGggAACAGGCCGCTATTCCATCTACATTGCCAACTATGCCAGCGGAACTGTAGGTCCACATGCTCTGATTGAAATGGATGAAAGCTCAAGTGACCCTTCCAAGGGAATCATCGCCCTGATAAACGTGGCTGAGCAGGCCGGAGTCAACAAGTTCACAGGCGGACGGGGGGTCGTGGTCGGTCCCATCCTCAGTCAGACCCTCCCTGACATTTTCTGTGACAATGAGTACAGCCCTAACTTTCTGTTTCGCAACAACGGAGACGGTACGTTTGCAGATGTGGCGGCACAAGCGGGGGTCGATGACCCGATGCAGCATGGCCGCGGAGTGGCTCTAGCAGATTTTAATCGGGATGGCAAGACTGACATTGTCTACGGAAACTGGAACGGGCCGCATCGTCTGTTCCTACAACTCAGCAATAATCGCAAGCAAAGGTTTAAGGACATCGCCACACAGAAGTTTTCCATGCCATCTCCTGTTCGCACCGTCATCGCAGCCGACTTTGATAATGACAACGAACTGGAGGTTTTTTTCAACAACATTGCCTACAGAGGACCTTCAGCCAACAGACTGTTCAGAGTTTCTCGGAGAGAACACGGAGATCCACAGATCGAGGAGCTGAACGTCGGGGAGGCCGCCGAACCAGAGGGACGGGGAACCGGAGCAGCCGTGACTGATTTTGATGGAGATGGACAGCTGGATCTTCTGGTGACGCACGGGGAAAGTGCAGCTCAGCCCATCTCAGTGTATCGAGTCACTCAGGGCTCGTCTAATAAATGGCTCCGAGTGATTCCACGCACGCAGTTTGGGGCTTTTGCTCGTGGGGCAAAGGTGAAAGTCTACACCAAGCGAAACGGCCCTCACATGCGCATTATAGACGGAGGATCAGGGTACTTGTGCGAGATGGAGCCAGTGGCTCACTTCGGACTCGGGAAAGATGTGGCCACCAGTGTGGAGGTGTTCTGGCCAGATGGATGTTCTGTGGCGAGAGCTCTGGAGCCCAGCGATATGAACAAAGTGATAGAGATCTATTACCCTGAGAATGAGGAAGAGGCGACCCAAGTGGTGAAGATCGAGTGTGGACCGGGATTTGAGGTCAATGAAAATGGCCGTTGCACTGACCAAGATGAGTGCACACAGTTTCCGTCTGTCTGTCCCTCTGAGCGACCTGTCTGCACCAACACCTACGGGAGCTTCAAGTGCCGTGCAAACAAGAGGTGTAACCAAGGATACGAGCCCAATGACGAAGGGACAGCATGTGTAGCCCAGGTAGCATATTTTGGAGGAAACAGATCCTCAGCCTCTAAGCTCTTGGCGTCCCATCTTTGGCCTCTCATACTAACTCTTCTCGCTGTCTTTACTGCTTGCTTGGGGGCATGAAGGGCAGTGCCTCTCCCCTCTCCTGACATCTCCCACCCTGCTTGGTCTCCGATTCTCcgctttcctttcttttttcgcACTGAGGTGTTTGGGAGTCAGCTGTAAAACGAACTCTCCATGGACCTGTCGCTCTTGCAATGTCGTCACTAACAGACCTGTAGAAATAACGCTTCGCTTTCCAGTCGGGAACCACATAAGATCCctgtttttcagataaagacAAGTATTCCCACACAAAGATCTTCATGTTCATCAACCGTGATGTGGGATAAGATTGCGATTGTAATGATCTTAGCGAAAGGCCGTGTCCCAGCGTGTTACGGGCAATTATGTGTTCTAGCGCATTCAGTCTCAAATCGGCAGCAGCGTGCTAGCAGGTTTTCCAGGAGAGCATATGCCGGGCCATCTGTTTCACGCAAGGTTGCATTCCTTGTGCTCTGAATAATACATTCACGAGAGTCGTACCATACACTTTTGACCCTCGCCAGCACTCACGACTGCCCTTAGGATCGGTGCATGTTTTTGGCATGGACGAGTTTCATTTAGCAAAATGTTGTTCAGATTTCTACATGTGGGATTTCACAGCGATCTAGCTGCAGAAACACAGGCCCAGACCACATTGTGAagtaaaactttcatttttaatcatgtttgATGTTCTCAGCTTTAAATACTACAATAGAAATAAGCCAAGGTTTCATTTGCGTGTTGGTAGTCGCTTTGATAGGATATGATGTCTTTTTATAATTTGCTATGGCCATAACcaaaaacttaatattttttttcttttagatattttcttttaaatattttaacttctGTCAGTGGccattgttcaaaaaaaaaccccttaaAAGTAGTCCATACATCTGTGCAGTCAAGACAAATAATAGTTTTGTGTGAGAAATAAgctgatattttaaaagattggCTAATGCATATTGTATATACTTTGAAAATGTGTGAATACAATGAAAATTATTTGGTGTAGGATTTATTTGAATCAATTGTCCCTAAAAATTTAActcaatttaatacaatttcaattttgaagtagaaatatgaactgtttttttcctcatgtgaACCAttgtaaattgattttttttttttttttttaggcaaacatattttttatatatttttttttattattcacacCTTCACTTTAGTTTTAAACTtttatgctgttatttattttaatagaacaTAGAAAAGAATCTTcacaaagctttttttccccaaaaaactaaaaccaccccccaaaacaataatatacatACTTTAAAAGATCATATTGTGTGAAAAACAGACCAAAGTTtaggtaatttttttaatgaaaatgatggtttctcacacaaagcttGCCTGTGGCTTCTGAAATCTGGAAAGATAGCACATAATTCATAAGGAccacttttattgtgttttgtttagttcCTTTTAAAGGATAAGTAAATACACAATGACTAAATTTTATTGGTGagtgaactaaccttttaagtcattattcactGGTAATGGCTTTGGATTTTCCCCTTATTCTAAAGCGGTCGGCTTAGTAAATGCATCACTATGTATTGtagatgtttcttttttttcattcatttttataaattgatttaatttagcattttcaaCCTTAGTTATTGGGATTGCTATGCAGAATATTCACCCAGGGTTAATGAACCGTCTGCGGCTCAAtgaaaaaggcattttaaaatgcagtacGAGCTCTGTTTGCTTTGGATGTAAATATCATTTCCTACAGAACGTCGTTGACTGGAATGAGACCGCTTATACGGGATCACCGATTTGCCGCAGAGCTCAGAATCCACATTcgctgcattttttaaaacatcgtGTATTGTCATAACTGGACTCGATGCTTTCGAACAGTCGCACCAGTTAAATTTGACATGAATTCACCGGTCTTTGATGGAGGTGTTAAATAGCTTCTGAACTGACTCACGATGTGTGCGTTGGCTGAAGACCCCTCAGTCTCCAGGGGCGAATATAgattctctttattttattacgcCGTTCTAATTTTCCATGTCATGACTCAGACGAAACATGTGCCGACTGCTTCGGGAAAAACGTCAGATCTCACAAAAGCTGACAGATGCCacctataattattatttaaatgatacatGTAGTTAGAAAGCAGATTAAATCAAGCTTACCTCAGTGTCATGGTTACAAGCAAAGGCACGGTGTGGAATCTCAATAAATGCATGTCGTGGTGAAGGGATACGTGAAAATACGAGCTGTCTTTGTAATGTCTGCCAAAGCGATTCTGTTGGAAATTCCAGCATGAGTTTCTATGCTAGTCTAGAGCGGTTCGAGCCGCTTAACCAGTAAAAAGATTGGTTAAGCTGGTTAAGAAGCTTGGTGGGCTGCAGACCGGCATGCAAAACATAACATGCACTGGTGTTTTCAACAGGGATGAATACAGAAGTGTTGAACGATTAATCAGATTATATGATAAGCTGCTGCCAATGAAGATGTAATTTCCACTTTTATGTCGAAATCATTTATATGGAAAAAGTAACTATAGTTTCAGTGAAAAGATGGCAATGTTTACTTGATCCCGTCTTTTGGTTTTCGAATGAATAGTTGCTCATTTTCTTTGCAGAATTCACTATAGTTTGGGATCCATGTGTAAAATAAAGTCAagtctttttctgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139282 lncRNA downstream 4153 15604687 ~ 15605713 (-) True G94132
TU139196 lncRNA downstream 325811 15279407 ~ 15284055 (-) True G94063
TU139177 lncRNA downstream 361282 15244531 ~ 15248584 (-) False col9a1b
TU139165 lncRNA downstream 378611 15227514 ~ 15231255 (-) False col9a1b
TU139147 lncRNA downstream 572872 15025712 ~ 15036994 (-) False lmbrd1
TU139297 lncRNA upstream 7705 15640275 ~ 15640633 (-) True G94145
TU139369 lncRNA upstream 53843 15686413 ~ 15720816 (-) False zgc:123010
TU139381 lncRNA upstream 129981 15762551 ~ 15762843 (-) True G94199
TU139382 lncRNA upstream 130854 15763424 ~ 15763745 (-) True G94200
TU139407 lncRNA upstream 244957 15877527 ~ 15885222 (-) False G94216
XM_043254645.1 mRNA downstream 48309 15546586 ~ 15561557 (-) True sfrp5
XM_043254556.1 mRNA downstream 102154 15443065 ~ 15507712 (-) True zgc:171482
XM_043254637.1 mRNA downstream 239516 15319657 ~ 15370350 (-) True slc35f3b
XM_043254618.1 mRNA downstream 356509 15227332 ~ 15253357 (-) True col9a1b
XM_043255651.1 mRNA downstream 510633 15024832 ~ 15099233 (-) True lmbrd1
XM_043254690.1 mRNA upstream 21895 15654465 ~ 15681394 (-) True loxl4
XM_043254602.1 mRNA upstream 53700 15686270 ~ 15700484 (-) True zgc:123010
XM_043256153.1 mRNA upstream 68857 15701427 ~ 15710148 (-) True pyroxd2
XM_043254746.1 mRNA upstream 111347 15743917 ~ 15748460 (-) True nkx3.3
XM_043254609.1 mRNA upstream 120066 15752636 ~ 15755128 (-) False nkx2.3
TU139278 other downstream 25949 15564617 ~ 15583917 (-) True G94128
TU139178 other downstream 356585 15250575 ~ 15253281 (-) False col9a1b
TU139176 other downstream 367069 15240750 ~ 15242797 (-) False col9a1b
TU138948 other downstream 1445518 14160323 ~ 14164348 (-) True srsf5a
TU139299 other upstream 9461 15642031 ~ 15642503 (-) True G94147
TU139376 other upstream 120077 15752647 ~ 15755060 (-) True nkx2.3
XR_006252348.1 other upstream 144909 15777479 ~ 15793538 (-) False LOC122356531
TU139406 other upstream 244957 15877527 ~ 15885222 (-) True G94216
XR_006252284.1 other upstream 379232 16011802 ~ 16162753 (-) False pcdh15a

Expression Profile