RNA id: TU152166


Basic Information

Item Value
RNA id TU152166
length 2042
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G102953
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 1124062 ~ 1128328 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGTATGACATCTGCAGATGTAGATGTATGAGAGAAAATCTATGCTGTGCCACACTGTTCAGCTACAAAAGTGTTATGCCTAAAGAGCAGCTCTAACCGTTCTCCTGGGCAAAACGAGACGCCTCTAGGAAGGTGACCTCACGGTCCGCATCCAGATCCTTCTTATTCCCGCACAAGATTATGACGATGTTGGGGCTGGCCAGTGTCCGTGCATCTGTCAGCCAATTAGTCAGAGCATTGTAGGTCTCCCGGCTAGAGAACAAAGATGAACACAAAGACAAATTAATCGATtgttgcttcttttttttttttccataacaaACTTTCACAGCAGATTTACAAACAAATCATGttactgtttatattatttttgtatgtgtatgtggaTGAAGTTGGACATACATATGAAgagttttactgtaaaaaccGATAAaagccacttaaaaaaaaaaaaaaaaaaacttcttcacCTATAGAGCAAtctgaacaaaaaaactgacaagCCCGCTGTGAACAGAAACCGGTAAATCCATTTTAGCGAATCAGCGCGCTGTATTCAGGTCAGGTGATTCGATGAACTTAATGAACCAGTGATATCTTCTTTAGGgtgtgaaatgaaaataaaagctgaaaaatttTCACATAACCTTGCAAAAGCAGCGCATTACAATGGCGAGGGAAAAGTGTAATCTCATCCATACAATCCATGACCACAACAACAACCTTTGTTAGGCATCTACAACGTCATCGTACTCACATAAAGCATTATTTGAATTTAGTAAGTCATGTTTTTGATGGATAAAATGTAACCAAACAgccaaaaaatatgaaaacagaaaaaaaatataattcagaaAAACTGCTATTCTGTACTACTAAGAAAGATTTTTCAAACAGACGGTGTCAATTATGGCATTAAATTAAGATTGCTCACCCTGGAGTGGGTTCACCCTTCGCCTATGGAACAGGCCTTATTACCAAAAggcaaccttttttttattaaatgttgacTTCGAGAGAATTGCCATGCGTGATACTAATTTTCTGAGTCAATATTTACTTTGATTTCCACCATTTACGATCGGTTCCAGAGAAACGGCTTTTGTGAGTCAATAACAGCGAACGCTTAACGTACTTCACTGTTAATACCGCTTCTCAGAAGTCAATGCCTGCGACGACCTCCGAGCGCTGCGAGAACCAGCGAGACAATACGTGACTCATAATGCCGTCCTTCACATTTCCTCGCTGTGCGTTCGTCGTGCTTTCAAGGaatcttgttttgtttgagtCACTGGTCTCCGGAGCAACCATTAGCCCGTGGCCACAGCAACAGACGAAAGGGAGCGTGGTGAATGTGTTCGAGAGTAAAGCAGTGAAAACGCTCTGCAGCTGCAGTGCTGAAGGACGACCCTCATCGGACGCACACAATCCATCACTCTGTTCATGTTTCTCTCTCACTGTGCTCACACCCCGTCTAATGGACCGAGAGTTGGCGCTCGCCAGAAgatgacattttattatagcGCTGTCAGTCTTTATTACTTCATTGTCTTTGTCTCTATTACCAGGACAGCTGCGTGGCAACCTGGAGCTCATTCAATTCAGTGCCGCAGTCATTCTCTCCATGTGCCTCTGTTTGACTTCCTTTCCTGCAgctaaaagatttattttttcatttcgcAAGAAATTAATCTTTGCGGACCCCCGCTGCTGCCCTACCTTGTGATGTCATACACGAGAAGAGCCCCCGCCGCTCCACGGTAGTAACTGCGGGTCACCGATCTGTAAGACAGAGAATGACCTCAACCAATCGAAGTCAGCACAGGCCAGCGAGGACGTGCTAATGAGCCGATCTCAGGCAAGTACCTAAAGCGTTCCTGCCCGGCCGTGTCCCAGATCTGCAGTTTGACCGTTTTGCCGCCGACGTTGACAACCCTGGAGCCGAACTCAACGCCGATGGTGTGGTTTGAGTCCTGTTTGACTTGTTTTCTATGAACTGGTGAAGGAGGCATGATTTCCCAGTCCCAGCGCTGCCAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152055 lncRNA downstream 125867 996617 ~ 998195 (-) True G102862
TU152048 lncRNA downstream 135479 987579 ~ 988583 (-) True G102858
TU152043 lncRNA downstream 160113 957694 ~ 963949 (-) True G102855
TU152035 lncRNA downstream 186247 937588 ~ 937815 (-) True G102850
TU152021 lncRNA downstream 243423 877159 ~ 880639 (-) True G102844
TU152193 lncRNA upstream 161136 1289464 ~ 1290140 (-) True G102970
TU152232 lncRNA upstream 219866 1348194 ~ 1404860 (-) True G103000
TU152240 lncRNA upstream 353329 1481657 ~ 1485234 (-) True G103003
TU152336 lncRNA upstream 494356 1622684 ~ 1626733 (-) True G103080
TU152405 lncRNA upstream 613393 1741721 ~ 1744473 (-) True G103114
XM_043259555.1 mRNA downstream 68632 1049513 ~ 1055430 (-) True ppm1na
XM_043258241.1 mRNA downstream 75669 1041863 ~ 1048393 (-) True si:dkey-202g17.3
XM_043258242.1 mRNA downstream 75884 1041863 ~ 1048178 (-) False si:dkey-202g17.3
XM_043258216.1 mRNA downstream 88681 1008754 ~ 1035381 (-) True ptgir
XM_043259159.1 mRNA downstream 140631 977361 ~ 983431 (-) True slc37a4a
XM_043259043.1 mRNA upstream 5817 1134145 ~ 1141675 (-) True ap2s1
XM_043258227.1 mRNA upstream 162475 1290803 ~ 1292963 (-) True tmem160
XM_043258676.1 mRNA upstream 168226 1296554 ~ 1316550 (-) False egln2
XM_043258675.1 mRNA upstream 168226 1296554 ~ 1316550 (-) False egln2
XM_043258674.1 mRNA upstream 168226 1296554 ~ 1316550 (-) True egln2
TU151874 other downstream 1022128 98628 ~ 101934 (-) False LOC122359153
TU152377 other upstream 648692 1777020 ~ 1789827 (-) True G103094
TU152433 other upstream 716671 1844999 ~ 1845494 (-) True G103130
XR_006252662.1 other upstream 1010239 2138567 ~ 2156930 (-) True scn2b
TU152493 other upstream 1079019 2207347 ~ 2291926 (-) True G103183
TU152527 other upstream 1545746 2674074 ~ 2675712 (-) False LOC122359207

Expression Profile