RNA id: TU160422


Basic Information

Item Value
RNA id TU160422
length 400
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G108569
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21727060 ~ 21727570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAACACTAAGAGACATCTCGGCCATGAAGTCCTCaacacatttaaatcaaatctgaGGAAGAAGTTTGAGCGTCTGTATGAAGGAACAGCAAAGCAGGGAAGCCCAACACTCCTGAATgagatctacacagagctctacatcacagagagtgagagtggAGAGATCAGTAATGAACATGAGTTGAGACAGATTGAGACACAGTCCAGGAGAGCAGCAACAGAGGACACACCGATCAAATGCAGTGAGATCTTTAGATCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggctGAAGGGAAAGAGAATCAGGACGTCCAGCTCATATTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160400 lncRNA upstream 109867 21616656 ~ 21617193 (+) True G108553
TU160232 lncRNA upstream 524551 21201387 ~ 21202509 (+) True G108427
TU160223 lncRNA upstream 536687 21072081 ~ 21190373 (+) True G108418
TU160192 lncRNA upstream 877145 20848722 ~ 20849915 (+) True G108394
XR_006252696.1 lncRNA upstream 888482 20833895 ~ 20838578 (+) False LOC122359263
TU160575 lncRNA downstream 298228 22025798 ~ 22026309 (+) True G108648
TU160590 lncRNA downstream 300867 22028437 ~ 22036838 (+) True G108654
TU160588 lncRNA downstream 303054 22030624 ~ 22036838 (+) False G108654
TU160589 lncRNA downstream 303054 22030624 ~ 22036838 (+) False G108654
TU160659 lncRNA downstream 449822 22177392 ~ 22178630 (+) True G108713
XM_043258549.1 mRNA upstream 794 21724404 ~ 21726266 (+) True LOC122358705
XM_043258913.1 mRNA upstream 3080 21715201 ~ 21723980 (+) True LOC122358927
XM_043258140.1 mRNA upstream 144153 21567245 ~ 21582907 (+) True mtnr1ba
XM_043259418.1 mRNA upstream 172520 21420083 ~ 21554540 (+) True fat3a
XM_043259419.1 mRNA upstream 172520 21420083 ~ 21554540 (+) False fat3a
XM_043258726.1 mRNA downstream 64036 21791606 ~ 21833216 (+) True LOC122358818
XM_043258551.1 mRNA downstream 115093 21842663 ~ 22014307 (+) True clstn2b
XM_043258731.1 mRNA downstream 324020 22051590 ~ 22065590 (+) False pxylp1
XM_043258732.1 mRNA downstream 328010 22055580 ~ 22065594 (+) True pxylp1
XM_043258742.1 mRNA downstream 439544 22167114 ~ 22174542 (+) True sgpp2
TU160418 other upstream 886 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 472055 21254934 ~ 21255005 (+) True trnag-ucc_4
unassigned_transcript_2155 other upstream 473512 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2153 other upstream 474245 21252742 ~ 21252815 (+) True trnai-aau_69
TU160236 other upstream 512567 21211810 ~ 21214493 (+) True G108431
TU160425 other downstream 4411 21731981 ~ 21733107 (+) True G108571
TU160426 other downstream 7444 21735014 ~ 21735718 (+) True G108572
TU160427 other downstream 9110 21736680 ~ 21737687 (+) True G108573
TU160996 other downstream 1048079 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 1221570 22949140 ~ 22953513 (+) True G108990

Expression Profile