RNA id: TU160659


Basic Information

Item Value
RNA id TU160659
length 1056
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G108713
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22177392 ~ 22178630 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCACTTTAAAcgttcatatttaaatgttttaattgagtGTTGAttatgtctaaaaaaaaattgagagcAATGAACTTAATTATGATACATGAATTTAATCTTTGATacaacactaaaataaatgtaacatcaGATGAATCCCTGTATAGTTTACTGCATTAGCTCAGATATTGTTTTCCTTAAGAAAAACTGAGAATATTTATCCAAACAAATTGGTATGGAATTGAATTTTAATGGAATCAGGACCTTGCGAATTGGAAAAGATTAGATTTTTTGAAATGTCTACCAAGTCCTAATAACGGATATCATTTACACGCACATGTCTTGGAAAgcctttttcatttgaattgtcagagagagggagggaaatggccataaaaacaaaatgacagatgCAGAGAAACCTTATAAAGGAAAACATCCAGAATATAAGAGATGGGGTGATTTCTAACCAGAGCGAATGTCAGCGCTTCGGTAAAGCCAGCGGCTGCAAGATCGTGCCTCTGATTGGCTACGGTGTACGTTCGCTGGCGTGCTCCTGACGATGTTGTTGAAGCCGTACGCGATGGCGGCGTCCTCCATGATGTCACAGGCGTGGATGACATCGGCGCGCGTGGGCGGGATCTCCACCCGGATCAGATCGCCCTCaccgctgacctctgacctcagacACATCCGGGTCAGCAGCTGAGCGATGCTTTCTGGCGattcgctgagaaaTTGACGCCAACTCTTTTGTTGATGAAGTCCCCAGACAGTGTCTCCGTCCTGTACGCCAGCTCCTGAAGTCAAAGtcgaaaaaaaaagactttaaaatgaGGCATTATTTATGACTAATAatgacatgattttttttttaagccaaacTATTGCcgctttaatctagatttaatatttagtcCTTCATAAAAAATTTAACTCTCCAACACCAGCATCTGttggacaaaaaataaaaaaaaatttatttaaaaaacacttttaataaaagttagCAAACATACATTAAACTGACTGTTATGAAacgtttacatttccaaaaataataataataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160590 lncRNA upstream 140554 22028437 ~ 22036838 (+) True G108654
TU160588 lncRNA upstream 140554 22030624 ~ 22036838 (+) False G108654
TU160589 lncRNA upstream 140554 22030624 ~ 22036838 (+) False G108654
TU160575 lncRNA upstream 151083 22025798 ~ 22026309 (+) True G108648
TU160411 lncRNA upstream 256982 21642583 ~ 21920410 (+) True G108561
TU160678 lncRNA downstream 87202 22265832 ~ 22323620 (+) True G108721
TU160685 lncRNA downstream 162102 22340732 ~ 22355913 (+) True G108723
XR_006252647.1 lncRNA downstream 167821 22346451 ~ 22349061 (+) False LOC122358849
TU160689 lncRNA downstream 168274 22346904 ~ 22349630 (+) True LOC122358849
TU160702 lncRNA downstream 213053 22391683 ~ 22446892 (+) True G108736
XM_043258742.1 mRNA upstream 2850 22167114 ~ 22174542 (+) True sgpp2
XM_043258732.1 mRNA upstream 111798 22055580 ~ 22065594 (+) True pxylp1
XM_043258731.1 mRNA upstream 111802 22051590 ~ 22065590 (+) False pxylp1
XM_043258551.1 mRNA upstream 163085 21842663 ~ 22014307 (+) True clstn2b
XM_043258726.1 mRNA upstream 344176 21791606 ~ 21833216 (+) True LOC122358818
XM_043258716.1 mRNA downstream 4918 22183548 ~ 22205101 (+) True scaf4b
XM_043258691.1 mRNA downstream 41580 22220210 ~ 22274827 (+) True tiam1b
XM_043258762.1 mRNA downstream 99358 22277988 ~ 22279228 (+) True LOC122358842
XM_043258750.1 mRNA downstream 104050 22282680 ~ 22284032 (+) True LOC122358834
XM_043258754.1 mRNA downstream 108160 22286790 ~ 22288670 (+) True cldn8.1
TU160427 other upstream 439705 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 441674 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 444285 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 451218 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 922387 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160996 other downstream 597019 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 770510 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 777117 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 1085546 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 1214125 23392755 ~ 23393038 (+) True LOC122359600

Expression Profile