RNA id: XM_043258754.1


Basic Information

Item Value
RNA id XM_043258754.1
length 1881
RNA type mRNA
GC content 0.45
exon number 1
gene id cldn8.1
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22286790 ~ 22288670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTTCATAGCAACCAGCCCGGAGTTCCCTCCCTCCCCTGAGCGAGAGGGCGGAGGCTGGGAACAGGTGAATGCCTATCAGCTCCCATTCCAGCGGGATGCAAAACCTCACAGTCTAAACCAGTCCTCACTCTTCAGGCTCCCGGAATCATGGCGAGCGGCGCCCTGGAGATCGTGGGAATGTGCGTGAGCCTGATCGGCCTCATCGGGGTGGCGGCTAGCACCGGGATGCCGATGTGGCGGGTCACGGCGTTCATCGGGGAGAACATCATCGTGATGGAGACCCGCTACGAGGGCTTGTGGATGAACTGCTTCCGGCAGGCCAACATTCGGATGCAGTGTAAGGTGTACGACTCTTTGCTGGCGCTGTCTCCAGACCTCCAGGCTGCCCGGGGTCTCATGTGCTGCTCTGTGGCGCTGACCGGGCTGGGTTTACTGATTGCCATCGCCGGGATGAGGTGCACGGCGTGCATCCAAGGGAACGACCGCGCCAAGCGCATGGTTCTGATCATCGCCGGCTGCATGATCCTAGCGGGCTGCCTCTGCTGCATCATCCCCGTCTCCTGGACCGGACACGCCATCATCCAGGATTTCTACAACCCCTTGCTCATCGATGCCCAGCGTAGGGAGCTCGGGGAGGCGTTGTACATCGGTTGGGTCTCTTCCGCCTTCTTATTCGCCGGCGGGTGCATATTCACCTGCTGCAGCGGGCCCCTGGACAAGGGCCCGGATCCGAGGTACATGTACACCAGGAACCCACCCTATGTGGCCTATCAGCCGCAACCCGTGGCCTATCACCCTCAGCCTCGCTCGGTGTACAGTCACCCGTCCGGGCCACCGTCGTTCATCGAGCAGTCGTACCAACCGTCCAGACAGCAGTCGTTCATTCAGCCGTCCCGACATCCGTCCGCCCGCAGCGCCGTGGCTTATCTCTAAAATCCAGCTGGACGTCTCACAagcttgtgtgtttatgttagAGACAGATGAAAAGGACAGGCTTCTaaccaaaagtttttttttttttttttaagtatatttggaaacaaaactgtttcatttttgggaacGTTTTCGGCTATGTTTAGATGTTATTTCTACTCATATCTATGCAGGAGCGGATGACAGATGTGAAGAACGTCTaaccaaagcttttttttttacacaaggtaaagatatttggaaatatttaaaaaggggttacacttcattttaaggtgtccttgctACAGTTTAATTCTACATTTAAAGAAGGAGTACTTTATAAGTAGAGCttggcttagggttacttgcatgtaattatacataatttattgttattataatagtaaatacacagcatgtaacatatataaaaacaacaccttaaaataaaatgttatctctgttttaaatttaacaaaCGTAggcctacatttatttatttatttttctgttccaTTCTTAAGAATGTTTTTGAATGCCATTTCTAATTTGGCTTTTTAAGtaggaaagaaaaaatgaatttcTAGCCATGggtgttacaaaaaaaaaaaaaaaacattttataaacttGGGcctgcatttcatattttttttttttttggggagaACGATTTTGACAGAATAGTTAATATAGTAAGAGAACTTTGAGAACTGTGACTAAGATGAAGAattgtttttaagatttttttgttgttgtttttatatgattCAATGTAAAGTACAGATAACAGATCATACCTCAGGATGTTGTAAAGTATGTTAATCGAGGTATTTTTGTATTATCTCAAAGCTGTCTATAATAGAAATgaggaaataaatgttttatattgagatatgtgtttttatgtgaataCCAAGGCGcaaaaaacaatgctttaactcaataaacaagtaaaaaata

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160659 lncRNA upstream 108160 22177392 ~ 22178630 (+) True G108713
TU160590 lncRNA upstream 249952 22028437 ~ 22036838 (+) True G108654
TU160588 lncRNA upstream 249952 22030624 ~ 22036838 (+) False G108654
TU160589 lncRNA upstream 249952 22030624 ~ 22036838 (+) False G108654
TU160575 lncRNA upstream 260481 22025798 ~ 22026309 (+) True G108648
TU160685 lncRNA downstream 52062 22340732 ~ 22355913 (+) True G108723
XR_006252647.1 lncRNA downstream 57781 22346451 ~ 22349061 (+) False LOC122358849
TU160689 lncRNA downstream 58234 22346904 ~ 22349630 (+) True LOC122358849
TU160702 lncRNA downstream 103013 22391683 ~ 22446892 (+) True G108736
TU160727 lncRNA downstream 213101 22501771 ~ 22510032 (+) False G108743
XM_043258750.1 mRNA upstream 2758 22282680 ~ 22284032 (+) True LOC122358834
XM_043258762.1 mRNA upstream 7562 22277988 ~ 22279228 (+) True LOC122358842
XM_043258691.1 mRNA upstream 11963 22220210 ~ 22274827 (+) True tiam1b
XM_043258716.1 mRNA upstream 81689 22183548 ~ 22205101 (+) True scaf4b
XM_043258742.1 mRNA upstream 112248 22167114 ~ 22174542 (+) True sgpp2
XM_043258746.1 mRNA downstream 1260 22289930 ~ 22293389 (+) True LOC122358830
XM_043258711.1 mRNA downstream 6646 22295316 ~ 22325707 (+) True grik1b
XM_043258712.1 mRNA downstream 6646 22295316 ~ 22325707 (+) False grik1b
XM_043258714.1 mRNA downstream 6646 22295316 ~ 22325707 (+) False grik1b
XM_043258713.1 mRNA downstream 6648 22295318 ~ 22325707 (+) False grik1b
TU160427 other upstream 549103 21736680 ~ 21737687 (+) True G108573
TU160426 other upstream 551072 21735014 ~ 21735718 (+) True G108572
TU160425 other upstream 553683 21731981 ~ 21733107 (+) True G108571
TU160418 other upstream 560616 21724555 ~ 21726174 (+) False LOC122358705
unassigned_transcript_2157 other upstream 1031785 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160996 other downstream 486979 22775649 ~ 22777725 (+) True G108951
TU161070 other downstream 660470 22949140 ~ 22953513 (+) True G108990
TU161085 other downstream 667077 22955747 ~ 22959370 (+) False msantd4
TU161296 other downstream 975506 23264176 ~ 23271291 (+) True G109132
XR_006252725.1 other downstream 1104085 23392755 ~ 23393038 (+) True LOC122359600

Expression Profile