RNA id: XM_043261405.1


Basic Information

Item Value
RNA id XM_043261405.1
length 6861
RNA type mRNA
GC content 0.51
exon number 31
gene id adgrb1a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22553763 ~ 22639975 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTGGTGTGACCCACGCAATGCTGTTGCTCCACAAGGGGGGGCTGCTGGATATATGCTTTAGTGCCCAACTGCCTGCCTTCAAACACTGAATCCAGTTTGTGCGGACAGAGCGGGCGAGGAGAGGAAGACTCCCACTGCCTCGATACGCACCGAGAGACCACCCGACCCGAGCCTAGGCTATACGCTCACCGCACACCTCCCTGGAGCCTTCACACACCACTTCAGGACTTTTTATCCGGAAAACGGGACAACCATTGCGATTTGCGGGCTGgattaaattataaacattCGGGAAACAGAGTAACATTATCAGAAGTGAcagaacagaaacacacattaaCAGGATCCGCTGTGAATTTATGGATGCTTGTTGCTTTTTTCGGTCCTTTGAGCACCTCTCTTCCACTGGAGCAAACAGACCTTCTTTTGTGTCATTGTTCAAGCAGATATTGCCTGTTGAAAGAATGAATACACCGAACTTATTCTGAACAAGTTGGAGGAATAGTCGAAGGCTTTTTATGTGCAGACAAACAGATGGGACATGCCAACTTTTTCGAGATCTCTCTGAGGGCGTCTGGCATCATGGACAGCAAACTGGATCAATGAGCCAAAGTTCAGTTCAGACGGTTCTGCAAACATCTGAGAATATTGGCTTGTCATCGGATTATCGGCTACATTAACAACTAGAGGTTCCCAGTAAGAGATATTTTCAGCCTTGCACTTTTCTGCACACCGTTCTGCCGTTTACAGCCATGATATCAAAATTCTCACGGAATTGTTCATCGTTGGTCCTGCTTTTCCCTATTCTCCAACTGCTGCGGCTGGACATGCTCAATGCTGCCCCCTCCGGTCCGGAGTCTGACACCTGCTCCACACTGGTCCAGAGCCGCTTCTTTGGATTCTTCCTCTCGTCCTCTGTATTTCCCAGCACGCCCTGCTCCTGGACCCTGCAGAACCCTGACCCAAGGCGCTACACCATCTTCATCAAGGTCACGAAACCAACCAGAGACTGCATTCCCAGACAGCACCGGACCTTCCAGTTTGACTCCTTCTTGGAGACCACACGAACCTTCCTCGGGATGGAGAGCTTCGATGAGGTGGTGAAGCTGTGTGATGCCTCTACCCATGTTGCCTTCCTGGAAGCTGGGAAACAGTTCCTGCAGATCCGGAAAGGGCTTCCCAGAGCGGGTGCCGGGTCCAGGAATGGCGATGGGGAATTTAAAGTGGAGTATCTTGTGGTTGGGAAGCGTAACCCCAGCATGGCTGCCTGTCAAATGCTGTGCCAATGGTTGGAGGACTGCCTGACCTACAGTACCTCCAACCGGCCCTGTGGCATCATGCAGACACCATGCCAATGTTGGGACCAGCCCCTGCCAGACAAAGAAACCAGTGGATGCTACCGGGATGGGATCTATTTGGAGAACTGCATCCCTGTTGTGAAAGAAGGAACAGCTGACACTGACACTAGCGGTGGCTGGAGTGGGTGGGGCAACTGGGCGGAGTGCAGCAGTGAATGTGGAGGCGGAGTCCAGACGCGCACTCGCACCTGTCAGTCACCACCTGAGGAGGCGTACCTGTGCGAGGGTGTTCTGGAGGAAGGTCGTCCCTGCAACTCTCAGCCGTGCATCGGCTACAGGCAGTATTCCTCTAAAGGCAAGGGTTTAAGTCCAGTGAAATACAAAGGAATGCAAGAGGCCATGCTTGGCAGAGGCCGACTTGGCACTCGTAGCCAATCCCTGCGCTCGGTGGACAGCCGTAAACGAGAGGACTCTGATAAGACCCGCAGCGGACAGCAGTCTTCCCAAACAGTGGATCCTACGTCGGGTGGGGAGTGGTCTGTGTGGAGCGTGTGTTCGACCACGTGCGGTGAGGGCTGGCAGAGCCGCACACGCTTATGCGTCTCGGTGCCGTACAGCACGCAGTGCAGCGGGCCGCTGCGTGAACAGAGACCCTGCAATAACACTGTTGTGTGTCCAGTGCACGGGTCTTGGGATGAGTGGACTCCATGGAGCTTGTGTTCTTCGACATGTGGCCGTGGGTACAGGGACCGCACTCGCTCCTGCAAGCAGCCGCTGTTTGGAGGAAACCCCTGCGACGGTCCAGAAAAACAGACCAAATTCTGCAACATTGCTGTATGCCCAGTGGACGGTGTGTGGAATGAGTGGTCCAGCTGGAGCTCCTGTTCCTCGTCCTGTTCGAATGGAACAATGCAGCGCACTCGGGAGTGTAATGGGCCCTCGTATGGGGGTCTGGAGTGTCAGGGCGAGTGGCGTCAGACAAGAGACTGTTTCCTCAGAGAGTGTCCTCTGGATGGTCAGTGGCAGCTCTGGAGCTCTTGGGCTGGTTGTACCAAAACATGTGGTGGAGGAAGCCAGCAAAGACAGAGAGTGTGTTATGGGCCCTTTTTTGGGGGTGAGCCGTGCCCAGGAGACAGAGAGGAAGTTAGACGTTGCAATGAGAAGAGATGTCCAGAGCCGCATGAGATCTGTGATGAGGAGAATTTCTCTAACGTAATTTGGAAGAAAACTCCTGCAGGGGACACTGCAGCCGTCCGCTGCCCTCCGAATGCTGTAGGACTGATTCTTCGGCGATGTTCATTAGACGATGAAGGCATTGCATACTGGGAGAACCCAACTTACATTAAATGCGTTTCAAATGATtacagaagtatccaaactttGaCCAGAGATCACCTGTCCAAGGCTCAACGAGGGCTTGTGGGAGATGGGGTCTCTGAAGTCATGACCAAGCTGAGAGTGACGTCGAGTGATGGAACAAGCTACAGCGGAGACCTTCTGGCTATCATAGATGTACTGAAAAACATGACAGAGATATTTAGGAGGTCCTACTACAGCCCCAGTAATGCAGACATGAGGAATTTTGTGCAATCAGTGAGTAACTTACTGATGGAGGAAAACAGGGAGAGGTGGGAGGAAGCACAGCTGCTTGGGCCAAATGTTAAGGAGCTTTTTCGTCTGGTGGAGGACTTTGTAGACGTCATCAGTCTCCGCATGAAGGACTTCCAGGATACTTATGAGGTCACCGACAATCTGGTGTTGAGTATTCACAAGCGGCCTGTCGCAGGAAATGCAGATATCACTTTCCCCATGAAGGGGTGGAGGGGGATGGTGGACTGGGCTCGCAACTCAGAGGACAAAGTCAGAGTGGCTAAAAACATCCTGGTCACTGGGAAACCAGATGAAGATGATGCCTCTGCGTTTGTGACTGGTATCGTACTGTACAGAAACTTGGGCAGCATTCTCTCTCTACAGAGaaatagcACAGTGCTGAACTCCAAGGTGATCTCGGTGACAATCAAACCCACTCCCAGCTCCCTCTCAACTCCACTAGAGATTGAATTCTCACACCTTTACAATGGTACCACAAACCAAACCTGCATTTCCTGGGATGAGAATGACAGCTCGTCTTTGCTGGGCTCCTGGTCTGCGCGAGGCTGTAGAGCCGTGCCCGTCGACTCCAGCACAACCAAATGCTTGTGTGACAGACTCTCCACCTTCGCCATTTTAGCACGCCTCAATCCCGATGTGAACATGGATAAGACCCAGCTTCCATCTGTGACTCTGATTGTGGGCTGCGGGGTCTCGTCCCTCACCCtgctcctcctcatcatcatctaTGTGTCTGTTTGGAGgtACATCCGCTCAGAACGTTCTGTCATCCTCATCAACTTTTGTCTGTCCATCATCTCCTCCAATGCACTCATACTTATCGGGCAAACTCAGACACGGAACAAGGTTGTTTGTACTCTTGTTGCTGCATTTCTGCACTTCTTCTTCCTGTCCTCTTTCTGTTGGGTTCTCACGGAGGCATGGCAGTCTTACATGGCCGTGACTGGCCGTCTTAGAAACCGTATCATACGCAAACGTTTCCTCTGCCTTGGTTGGGGTTTACCTGCTCTAGTTGTAGCAATTTCGGTTGGATTTACCAAGGCAAAGGGATATGGCACTGTTAACTATTGCTGGCTGTCTCTGGAAGGCGGATTGTTGTACGCATTTGTGGGACCAGCTGCTGCTGTCGTCTTGGTTAACATGGTTATCGGGATTCTGGTTTTTAACAAACTGGTGTCTAAAGATGGCATAACTGATATGAAACTCAAGGAGAGGGCCGGGGCGTCGCTGTGGAGCTCCTGCGTTGTATTGCCACTGTTGGCTCTCACTTGGATGTCGGCGGTCCTGGCCATCACCGACCGCCGTTCAGCATTGTTTCAGATCCTTTTTGCCGTCTTTGACTCCCTCGAGGGCTTCGTTATCGTGATGGTGCATTGCATCCTGCGCAGAGAGGTACAAGAGGCCGTAAAGTGTCGTGTTGTTGATCGTCAAGAGGATGGAAACGGTGACTCCGGTGGATCTTTCCAGAACGGCCATGCTCAGCTGATGACCGACTTTGAAAAGGATGTGGACATGGCTTGTCGGTCAGGCACCCTAAAGCGTTCCTCCCAACAAGGTGAGGAGAAGGTAGCTTCACAGCAGATCACGGTACAGAAAGGCTCCAACTTCAACACCCTTCCTGCCAGCATGGCAAAGGTCCACCTGCAAAACGTCGCTGACTACGCCAGCCACACTCTCACCATGCGTCGCGACAAAGGCGGCATTGCCGGGGTCAGTACCGAGTTACCCGGAGCCAAATCTATTTACATCTGTGACGGCGAGCTCTTCAAGCAGCTGGATGGAGCCCCGGGAGACAGTGGCGGTCccgaaggaggaggaggaggaggaggtgggtCGGGCCAGGGTTACGTGCTCCTGCCCAACAACAATAACACCCTCAGGCCCGCAAAGGGCGGAAAGGACGACCAAGCCACCAAGTACAACATCAGCATCGAACAGTTACCCCAGACCAGGCTCATCCACCTGGCCAACCCCGCCGGCACTGATCCCGTGCCAGGCTTCGGGTTGAAGAGCCTGCCCACCGACCGAGTCAGCGTTTCCTGCTCAGAGAGGGACTCCCCGGTGCAGACGGTGCAAAACATTTCCAGCGAGTCCCAGATGACAAACACATGTGAGCAAGGGGATTCTGGGAACTCCGGCATGATGTCTAAGAGTGAGACCGTCTCAACACTGTCTATGAGCTCTTTGGAGAGACGAAAATCACGCTATGCAGAGCTGGACTTTGAGAAGATCATGCATACACGGAAGCGCCACCAGGACATGTTTCAGGATTTAAACAGGAAGCTGCAGCATGCAGAGAAGGACAGAGATTCTCCCCCAGTGGACGGGAAGACTGGGAAGAGATGGAGCGTGTCATCAGGAGGCAGCGATAAAACCAATCTTAGTGACAAGCAGCAGACCCCCAGCAAGCGGGCATGGGAGGGCATCAGGAAGACCCACTCACCACCGTCTTGGGTGCGCAAGGAGCTGGAGCCCCTACAGGCCTCTCCTCTGGAAATGCAAGCAGTGGAATGGGAGAAGGCCAGCGCCACCATCCCTCTGGTGGGCCAAGAGATCATGGACCTGCAGACGGAGGTCTGAGAGACCCCCAGAGCATTCAGAGAAACAGAACATACTCTACTCGCAGGGAAAAGGGACAAAGAGAGATTTGAGAGTGCGAACAAACAGAAGTATGCAAGAAAGAAAGCAACATGGCtgtgcaatttttatttgtgttgttttttgtttttttgtttttttgtattcctgGAATGGCCTTTTCCTTAATGTCAAAGCGAATCATAACACTTTCGAAAATCCAGGTCTGAGCCTGTTGCTGTGGTAATGAGCCGGCGCTACCGAGAACGGCTGAACTGGGCAAGTTGAATCCTGGGAGTGACTAAAGGGAAGGACTAAGAGCAGATGAGCCTTAGTGAGTGGCCTTCAATTTCTTACACCtctggatacacacacacacacacatcatgtcACATTTATGGAAGAAAGAGAAGTAGCGctacaaaagaaagctttcaaaCTGCCCGGTAGGAATCAGGTGAGCTACACGtcattcaaaatcaaattctTGAATATTATTAGTCTTATTATCATCGTTGTTGATCGGTGTGACACACAACACATGCGTACGCTTGGGGCGCGAAAGGCGACGTGATTGCCCGAAGCCATTTGACTGTTATTCTGTCTCAAACGCCCTTCTGAGCCAGTACAGCCCACTGCTTAGCCACTGTGCTCTCCCGTGCACCGCAACGACCTCGGGATCCTTCGAGATTCAGCTCGGAAACGGGTCGGCGGTCCAGCTGGTGGGTTCGTGAAACCCGACGCGTCTACATTCGCTTGATGTTCCCATCAGAATCACTGGAGCTGTGAGGCCTTGAAACAAACTGCTGAGTCTCAGAATACGTGCAGAATCGTGTTTGAAAGAGAAAACGGAGATGAAAacgaatatataaatatatatattataaatagtcTTATATATGAAACTGCAGAGGGGTGTTATTCTCTGGTTAGGTTGTGGTCGCACACAGAGAAAGCACAAGACTCACTCCTCAGAGTCCTGTTGTACAGCATTGTAATTATTTCCAGAAGAGTTCTACAAAATGAATTTTAGCCTATAAATATCTTTCTTACTGTGCTTGGGGAATAttgttaacattattatagATATCATTGCGATTCTGAGATCCCCCCCCTCCCCACAAACTGGACTGGACTTTATCAGTGTTCTGTAACATCATGTAACGGTGTGTATTTCGGTATCACTGACTGTCACTCCAGATGATACGTACTTGCCTGAATTCTCCACCATCTGCccctccttctccttctctccCTTGCCTTTCCACGCTCCCTTTTTTAAGTTCACTGGGGTTTCTTTGTTATTGTACAGTTTTCAGAGCACAAAATGAATGTGtcatatttctaataaaaaagtatatctatataataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170216 lncRNA upstream 23502 22527157 ~ 22530262 (+) True G115288
TU170090 lncRNA upstream 552147 21997010 ~ 22001617 (+) True G115200
TU170026 lncRNA upstream 724233 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 859220 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 1162602 21390781 ~ 21391162 (+) True G115074
TU170288 lncRNA downstream 127526 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 343086 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 359474 22999449 ~ 23003110 (+) True LOC122359996
TU170358 lncRNA downstream 368629 23008604 ~ 23009835 (+) True G115384
TU170340 lncRNA downstream 412445 23052420 ~ 23077876 (+) False G115371
XM_043260352.1 mRNA upstream 240739 22261301 ~ 22313025 (+) True rspo2
XM_043261628.1 mRNA upstream 294998 22220874 ~ 22258766 (+) True eif3ea
XM_043260421.1 mRNA upstream 413937 22136568 ~ 22139827 (+) True LOC122360094
XM_043260213.1 mRNA upstream 543605 22004235 ~ 22010159 (+) True gdf6a
XM_043260811.1 mRNA upstream 563848 21983890 ~ 21989916 (+) True ebag9
XM_043260329.1 mRNA downstream 95904 22735879 ~ 22737796 (+) True si:ch211-198c19.1
XM_043261182.1 mRNA downstream 104909 22744884 ~ 22761065 (+) True cep162
XM_043261186.1 mRNA downstream 104909 22744884 ~ 22761065 (+) False cep162
XM_043261184.1 mRNA downstream 105133 22745108 ~ 22761065 (+) False cep162
XM_043261183.1 mRNA downstream 105161 22745136 ~ 22761065 (+) False cep162
TU170081 other upstream 574396 21977117 ~ 21979368 (+) True G115193
TU170042 other upstream 659232 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 680792 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 1414812 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 2326687 20219644 ~ 20227077 (+) False hjv
TU170321 other downstream 269586 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 324594 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 470308 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 524591 23164566 ~ 23166279 (+) False wnt4b
XR_006252835.1 other downstream 582082 23222057 ~ 23223731 (+) False rps9