RNA id: TU187327


Basic Information

Item Value
RNA id TU187327
length 422
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G126856
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16942819 ~ 16943240 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGAAGGATACGAAACAAATTGGACCACAAGCTACAAACGAAGCCGCAGACTTTAACGAGCTGCGTTTATGAGCCCAAACGGGTGAGAATCCGTGGAAATCATCAGCGAAGAGGATAAACGTGAACAGATGCAGCTCTGGAAGCTTGATCCCTTCAGGCCTAAACCTGCCAGAAAACATCTACAGGTGAACGGACACTGCTTTCAGGAGCTGACGGAttcaaaaaaggtaaaaatcgCATCCGAATTGTCCTCTTTGACCAGCAGGGTCTACATCCGGTCCTCTTTGAGCAGACACACAGACCTGGAGATCCGTCGGTCTCACAGACACTGCTGAACATATTTACAGCTCATTTTTGATTTCGTGTAAATGTGAAAGACTGACcgataaccaaaaaaaaagagagttaaACGGGAATGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187325 lncRNA upstream 5333 16937101 ~ 16937486 (+) True G126854
TU187227 lncRNA upstream 68834 16835289 ~ 16873985 (+) True G126797
TU187220 lncRNA upstream 79077 16805219 ~ 16863742 (+) False G126794
TU187222 lncRNA upstream 80350 16805219 ~ 16862469 (+) True G126794
TU187264 lncRNA upstream 124470 16817731 ~ 16818349 (+) True G126820
TU187329 lncRNA downstream 1123 16944363 ~ 16944728 (+) True G126858
TU187330 lncRNA downstream 2052 16945292 ~ 16946656 (+) True G126859
TU187331 lncRNA downstream 2154 16945394 ~ 16946656 (+) False G126859
TU187340 lncRNA downstream 30471 16973711 ~ 16975385 (+) True G126865
TU187346 lncRNA downstream 70518 17013758 ~ 17015325 (+) True G126867
XM_043264457.1 mRNA upstream 113465 16819287 ~ 16829354 (+) True ulk3
XM_043264649.1 mRNA upstream 153146 16780682 ~ 16789673 (+) True larp6a
XM_043264914.1 mRNA upstream 224661 16705581 ~ 16718158 (+) False myef2
XM_043264913.1 mRNA upstream 224661 16705585 ~ 16718158 (+) True myef2
XM_043264432.1 mRNA upstream 264753 16618171 ~ 16678066 (+) True fbn1
XM_043264852.1 mRNA downstream 15584 16958824 ~ 16971364 (+) True LOC122363001
XM_043264314.1 mRNA downstream 123854 17067094 ~ 17069819 (+) True LOC122362752
XM_043264794.1 mRNA downstream 135819 17079059 ~ 17099562 (+) True LOC122362967
XM_043216503.1 mRNA downstream 360529 17303769 ~ 17306045 (+) True LOC122322904
XM_043264317.1 mRNA downstream 382726 17325966 ~ 17354848 (+) True unc13c
TU187265 other upstream 124420 16817731 ~ 16818399 (+) False G126820
TU187112 other upstream 671552 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 887192 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 887192 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 989166 15952019 ~ 15953653 (+) False LOC122362954
TU187381 other downstream 130954 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 186682 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 186682 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 360580 17303820 ~ 17305974 (+) False LOC122322904
TU187390 other downstream 360580 17303820 ~ 17309158 (+) False LOC122322904

Expression Profile