RNA id: TU187340


Basic Information

Item Value
RNA id TU187340
length 1675
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G126865
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 16973711 ~ 16975385 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGCGTAAGTGTGTTTCCCTGGTCACCTGACCCATGACATCACAATCATACAGCATCgcggtgacctctgacccccgAGGCCGAGGTCACCCGGTCTTTGGTTTCTAGCTGAGCAGCAGCTGAAGGCAGTTTGATTCGGTTAAGGTGAGCAGGTCTGGCCACCTGATTGTACAAATGCATCAGTTCACGTCTGGTTTTGCCACAAGAGAAAGACACGGAGAGAAAGGAAAGTCCAGCTCGAGGGATTCACGTCCAGCATATTCCAGATCCTGCGCGGAAGCGGCAGCACGAGGTATGTAGTGTAAATCTCCACAGCAGAGTCTGAGGTACTTCGCCACCGATTATCCATTTATATCATCTTAAAAACAACAAGAGTTCacttaaaaacatcacagtactTCCTGAGAGAGACGCCTTCCTGGGACGGAAGGCAACAACGTCAGACAAAAACATCAGGCCCTGAAGCATCGGTGTGGAAGAAAGAGGACGACGGTTTGCTCGAGGAATGATTGCATGCTTACGCCGAGAACTTCGTCACACCATTCGTGGGTGAATCTCATGaaatgacctttgaccccaaatcaacaggaagagaaaaaggagaaaatgacTCCTGCTTTTAggatgtatatataaaatataaattgtgtcatgcaaatatctatatatttcaAATCTTGTATGTACGCATACGTGTGCTTGCATATATTTATCAAACTATAATGAAATATGTGCATATACGTatgcatggtaaaaaaaaataataaaatggcaaaaattcaAAAGCTTGGGATTAGaactttgtctttgttttaaggCTGTATCTATCAgggaaaaatgtgaaatgtcgcaatttaaaataacagttttctattttcatatacaacttattcctgtgaattttcagcatcatttctccagtctttcAGTGTCAcgtcatccttcagaaatcattctcatatACTGGTTGCGAACGCTTCTGATTTGGAAGCagtttttttgctcaaaatagAAATTCCGTGTACTCCAGTCATTGGttcattgctatttttaaagaaatattttatattatttttatataattatttatataatttttaggatgtgttaaatggaggaaacgttttttaaatgttgaataaatgctgttcttttacatttttattcatctgaGATTCGGCGCTGcaccacagaaataaacaatattttaaagtatataaaagtagAAAACCACTATTAGAAATTGCGCTGATTTTTCACACTATTAATGTTTTTcagtacttttgatcaaataacttttgaataatgcacattttcttcatttttttttacgcatCGTTAAATTCAATTTGACATCTACTAAATATTCACGCAAGCGTGTGATGATTGATGCGTTTCCATGAGATTCACCCAGCTATGTAAAACCTGCCCTGAGACCCAgatgaaatgatttgttttcgCAGAGAGGGCCGATTGCTCGTTTAAACATTTACTGAGACATTCATCTGGTTTCTGAGGTATTTGACGGTTGTTCTTGAAGACATCATCAAACGAACGCGCTGCAGGACAGCAGATATATATTCCTGAGAACCTGATAAGATTCAGAGACTCATCTCCGCTGACGGGAGAAACCGGCGAGGTCCCGTCAGCGTCACCAATTCAAACCAAttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187330 lncRNA upstream 27055 16945292 ~ 16946656 (+) True G126859
TU187331 lncRNA upstream 27055 16945394 ~ 16946656 (+) False G126859
TU187329 lncRNA upstream 28983 16944363 ~ 16944728 (+) True G126858
TU187327 lncRNA upstream 30471 16942819 ~ 16943240 (+) True G126856
TU187325 lncRNA upstream 36225 16937101 ~ 16937486 (+) True G126854
TU187346 lncRNA downstream 38373 17013758 ~ 17015325 (+) True G126867
TU187347 lncRNA downstream 39135 17014520 ~ 17015325 (+) False G126867
TU187356 lncRNA downstream 40147 17015532 ~ 17017525 (+) True G126875
TU187363 lncRNA downstream 46001 17021386 ~ 17023370 (+) True G126879
TU187370 lncRNA downstream 56165 17031550 ~ 17033340 (+) True G126881
XM_043264852.1 mRNA upstream 2347 16958824 ~ 16971364 (+) True LOC122363001
XM_043264457.1 mRNA upstream 144357 16819287 ~ 16829354 (+) True ulk3
XM_043264649.1 mRNA upstream 184038 16780682 ~ 16789673 (+) True larp6a
XM_043264914.1 mRNA upstream 255553 16705581 ~ 16718158 (+) False myef2
XM_043264913.1 mRNA upstream 255553 16705585 ~ 16718158 (+) True myef2
XM_043264314.1 mRNA downstream 91709 17067094 ~ 17069819 (+) True LOC122362752
XM_043264794.1 mRNA downstream 103674 17079059 ~ 17099562 (+) True LOC122362967
XM_043216503.1 mRNA downstream 328384 17303769 ~ 17306045 (+) True LOC122322904
XM_043264317.1 mRNA downstream 350581 17325966 ~ 17354848 (+) True unc13c
XM_043216683.1 mRNA downstream 449769 17425154 ~ 17425977 (+) True ompa
TU187265 other upstream 155312 16817731 ~ 16818399 (+) False G126820
TU187112 other upstream 702444 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 918084 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 918084 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 1020058 15952019 ~ 15953653 (+) False LOC122362954
TU187381 other downstream 98809 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 154537 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 154537 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 328435 17303820 ~ 17305974 (+) False LOC122322904
TU187390 other downstream 328435 17303820 ~ 17309158 (+) False LOC122322904

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU421596 False 874 lncRNA 0.44 1 CI01000166 26170 ~ 27043 (-)