RNA id: TU187356


Basic Information

Item Value
RNA id TU187356
length 602
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G126875
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 17015532 ~ 17017525 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCATGGGCATATTTACaggtatatacatttaaattatatttcacataatatctaaatagatttaattaactcttacatatatacacgtgtgtgtatttctatatacataacatttacacaataCACAACATACATGTATTatctaaacaaaaacttgtgtgcaatgaatcatttgacagcactgcttTTCTGTTATGAACCCGTGCTGGAAACAAGCCTGCGTTTATTATTCAGAATTATAAACCTGCGGTGCTGTAATATCCTAAAACCGGCCTCACTTTCAAGTATCACTCCTACCTGCTTCTGGTCTCGAGGTGATCTATGATTTGGTGAGAAGGAAGTCCTGGCTCTGGTCTAAGTGTTCAGGACTGTAGTGTGATGAGGTCGGGGTCGGGGTCAGGGTCGGGGTCGAGGTGGAGGTCACTGCACACAGCAGGAGCAGCAGGACGATGAGCTCAGGGCCTTCGGAGGAATCAGGTCCAGGTCCTCGTCGTCGGGGATTTCATCCAGATGATACCCGTCCTTCAGCAGCTGTCTGCTCAGGTCCGGGTGCACCTTTAAAACaccCTCTGCTGAAGAATATCCAGATGAACAGTCCAG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187346 lncRNA upstream 207 17013758 ~ 17015325 (+) True G126867
TU187347 lncRNA upstream 207 17014520 ~ 17015325 (+) False G126867
TU187340 lncRNA upstream 40147 16973711 ~ 16975385 (+) True G126865
TU187330 lncRNA upstream 68876 16945292 ~ 16946656 (+) True G126859
TU187331 lncRNA upstream 68876 16945394 ~ 16946656 (+) False G126859
TU187363 lncRNA downstream 3861 17021386 ~ 17023370 (+) True G126879
TU187370 lncRNA downstream 14025 17031550 ~ 17033340 (+) True G126881
TU187378 lncRNA downstream 112397 17129922 ~ 17167921 (+) True LOC122362575
TU187379 lncRNA downstream 112397 17129922 ~ 17171335 (+) False LOC122362575
XR_006253132.1 lncRNA downstream 112445 17129970 ~ 17170984 (+) False LOC122362575
XM_043264852.1 mRNA upstream 44168 16958824 ~ 16971364 (+) True LOC122363001
XM_043264457.1 mRNA upstream 186178 16819287 ~ 16829354 (+) True ulk3
XM_043264649.1 mRNA upstream 225859 16780682 ~ 16789673 (+) True larp6a
XM_043264914.1 mRNA upstream 297374 16705581 ~ 16718158 (+) False myef2
XM_043264314.1 mRNA downstream 49569 17067094 ~ 17069819 (+) True LOC122362752
XM_043264794.1 mRNA downstream 61534 17079059 ~ 17099562 (+) True LOC122362967
XM_043216503.1 mRNA downstream 286244 17303769 ~ 17306045 (+) True LOC122322904
XM_043264317.1 mRNA downstream 308441 17325966 ~ 17354848 (+) True unc13c
XM_043216683.1 mRNA downstream 407629 17425154 ~ 17425977 (+) True ompa
TU187265 other upstream 197133 16817731 ~ 16818399 (+) False G126820
TU187112 other upstream 744265 16264758 ~ 16271267 (+) False LOC122362750
TU187042 other upstream 959905 16052878 ~ 16055627 (+) False LOC122362745
TU187043 other upstream 959905 16053129 ~ 16055627 (+) False LOC122362745
TU186953 other upstream 1061879 15952019 ~ 15953653 (+) False LOC122362954
TU187381 other downstream 56669 17074194 ~ 17077159 (+) True G126884
TU187377 other downstream 112397 17129922 ~ 17164757 (+) False LOC122362575
TU187380 other downstream 112397 17129922 ~ 17164757 (+) False LOC122362575
TU187389 other downstream 286295 17303820 ~ 17305974 (+) False LOC122322904
TU187390 other downstream 286295 17303820 ~ 17309158 (+) False LOC122322904

Expression Profile