RNA id: XM_043264811.1


Basic Information

Item Value
RNA id XM_043264811.1
length 1769
RNA type mRNA
GC content 0.48
exon number 11
gene id acadl
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10352575 ~ 10361312 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGAAGTGTCCTTTAATTAGAGTAAAGTTCACGGACGATATTTGACCTGTTAAATATTGTGCCTTAGCGTTTGAGTTGATCTAGTCCACATCACCATGTTTGCACTAAAGGCACTAAGGAGTTTTTCTCCTGCGACGAAGAATGTTTATTTGCGGAGTAAACAGGCGTTTAGTGTGACTATGTCGAGAATGCAGCACGCGGAGGTCCAGGATGGGGAAGCAGTAGCACCTTTTCGACCTGAAACTCCAATGGCCAAGACCCTGATGGACATTGGCACCAGACGGATCTTCTCAGAGGAGCATGACCTGTTCCGTCAAAATGTGCGCCGGTTCTTTCAGGAGGAAGTTGTCCCGTACCACGCTCAGTGGGAGAAGGCTGGTGAGGTCAGCAGAGAGGTATGGAAAAAGGCCGGAGAACATGGATTGCTGGGAATATATACACCTGAGGAGCATGGAGGAATCGGAGGGGACCTCCTGTCTGCTGCTATAGTGTGGGAGGAGCAAATGTACTGTAACTGCAGTGGTCCTGGGTTCTCCCTTCACTCTGAGATTGTAATGCCTTATATCAGTCACTATGGCTCTAAGGCTCAGATCGAGCACTATATTCCACAGATGACTGCTGGGAAATGCATCGGGGCCATTGCTATGACAGAACCTGGAGCTGGCAGTGACCTTCAAGGAGTGAAGACATTCGCAAAAAAAGATGGAACTGATTGGATTCTTAATGGAAGCAAGGTGTTCATCACTAACGGCTGGATGTGTGACGTGGTGATTGTAGTTGCTGTGACTAACCGCGAAGCAAAGACGGCAGCTCATGGAATCGGTCTGTTCCTGGTCGACGCCGGCGCTAAGGGCTTCCAAAAGGGCCTCAAACTGGAGAAGCTTGGGCTTAAAGCTCAGGACACAGCTGAACTGTTCTTTGAGGATGTGCGTTTGCCCGCTGAAGCTTTGCTGGGTCAGGCCAGTAAAGGATTTTATTATCTGATGAACGAGCTTCCACAGGAGCGCATTCTGATATCGGTCATGGCTCTTGCCAGCTGCGAGTTCATGTTTGAAGAGACGAGGAACTATGTGATGCAGCGGAAGGCGTTTGGCAGGACCATCGCTGATCTACAGGTGGTGCAGCACAAACTGGCTGAGCTGAAGACAGAAATCTGCGTAGGTCGAGCTTTTATTGACAGCTGCCTTCAACTCCACAGTGAGAAGAAGCTGGACTCGAGCACGGCGTCCATGGCCAAATACTGGGCCACAGATTTGCAGAATAGAGTTGCTACTCAGTGCCTGCAGCTTCACGGAGGATGGGGATACATGTGGGAGTATCCGATAGCCAAGGCCTTTGCGGACTCCAGAGTTCAGCCCATCTACGGCGGAACCAACGAGATCATGAAAGAACTCATCTCGCGCAACATCGTTAGcaaaaaatgatgttaaaaagaCGAGGGTTTGATTAGTTACCTCTCATTTCTGTAGCTGGAGCTTCACTGATTGTTGATTAGGAAAAAATAGTTTCCGATGAGTTATCCAACGCATGCAAAACGTTCACGGTTATATCATATGATGTCTGCAGAGAGAAGGTCTCTTCTGTTCGTTACTCTGCTCTGTATGGATGGATGTTTTAAGCAACCTTTGCCTCCCGGGTGATCAGTTCGTGACGCTAAATGCAGAGATTTGTAAAGTTCGGATGCTTTTGTAGAGATTTGACTGTTTTGATATGTGAATACTTTTGTAAACTACTAAATCTTTATAAAGATATTTCTAAAGATGGCTAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00255 ACADL; long-chain-acyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185067 lncRNA upstream 820 10351418 ~ 10351755 (+) True G125356
TU185063 lncRNA upstream 3879 10344769 ~ 10348696 (+) True G125353
TU185062 lncRNA upstream 9121 10341767 ~ 10343454 (+) True G125352
TU185055 lncRNA upstream 10990 10308554 ~ 10341585 (+) True G125347
TU185056 lncRNA upstream 15596 10286727 ~ 10336979 (+) False G125347
TU185070 lncRNA downstream 1619 10362931 ~ 10363236 (+) True G125359
XR_006253126.1 lncRNA downstream 43102 10404414 ~ 10408746 (+) True LOC122362497
XR_006253125.1 lncRNA downstream 43102 10404414 ~ 10408692 (+) False LOC122362497
TU185090 lncRNA downstream 45658 10406970 ~ 10407388 (+) True G125367
TU185092 lncRNA downstream 46817 10408129 ~ 10408816 (+) False LOC122362497
XM_043216704.1 mRNA upstream 16822 10328942 ~ 10335753 (+) True lysmd2
XM_043264789.1 mRNA upstream 31927 10297497 ~ 10320648 (+) True tmod2
XM_043264595.1 mRNA upstream 138089 10209353 ~ 10214486 (+) True bcl2l10
XM_043264594.1 mRNA upstream 143425 10196804 ~ 10209150 (+) True gnb5b
XM_043264134.1 mRNA upstream 159415 10190770 ~ 10193160 (+) True LOC122362596
XM_043263966.1 mRNA downstream 54701 10416013 ~ 10422839 (+) True gldn
XM_043264742.1 mRNA downstream 271375 10632687 ~ 10718085 (+) True sema6dl
XM_043264741.1 mRNA downstream 338729 10700041 ~ 10718085 (+) False sema6dl
XM_043264740.1 mRNA downstream 339241 10700553 ~ 10718085 (+) False sema6dl
XM_043264743.1 mRNA downstream 339241 10700553 ~ 10718085 (+) False sema6dl
TU184804 other upstream 987087 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 1815627 8176353 ~ 8536948 (+) True G125041
TU184436 other upstream 3174299 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 3179555 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 3325440 7026318 ~ 7027135 (+) True G124881
TU185257 other downstream 463662 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 463662 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 606773 10968085 ~ 10969767 (+) True G125496
XR_006253172.1 other downstream 864803 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 873019 11234331 ~ 11237147 (+) False selenot1b

Expression Profile