RNA id: XM_043264742.1


Basic Information

Item Value
RNA id XM_043264742.1
length 5037
RNA type mRNA
GC content 0.49
exon number 21
gene id sema6dl
representative True

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10632477 ~ 10718085 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccTCGCAGCTGCGTGGATGACAGAGAGAGCAGCGTGCATGTGGACCACTGTCTCTCAGTCTGAGCGTGTGACAGTCCAGCTTGTGGAGGAGCTCACTCTCCTCATCTCTTCACGTGTGAGTGTCCTGCAGAAACCCGACAGAACGACTGTGAAAAACTGACGTTCCTTACAGCGATGTCCTCCTTCATGCCCCACTGAATGAGATGAAATCTCATCTGTTGCTGTTTCTAAAGGTACTCTGAGAGCGTTCGCCTGCAGTTTCGGTAACATCTACATAAGTGCAGTACAGGAGGTGTGTGCCCTCTGTGCCAGCGATGGGGTGGCGAGAACTGACGATtgacctgctgctgctgctgctgctggtggcATCCCATCTGGAGGCTGTGAGCTTTCCTGAGGACAACATCCCTTTAGACGTTGTGGACCGACACTATGCACGACAGTACCCCGTGTTTCGCGGACGCCCCTCTGGCAACGAATCTCAGCACAGACTGGACTTTCAGCTCATGACCAAGATACATGATACACTTTTCATTGCTGGCAGGGACCAGGTGTATTTAGTGAGCCTGAGAGAGTCCTACAGGAATGAGATTATTCCGTACAGGAAGCTGACGTGGCGGTCGGGACAGGCAGACAGGGAGACGTGCGCCATGAAGGGAAAGCACAGAGACGAGTGCCATAATTTCATTAAAGTCCTGGTTCCGAGAAATGATGATCTTGTGTTCATCTGCGGAACAAATGGTTTCAACCCCATGTGCCGTTACTACAGGTTGGATAACTTGGAGTTTGATGGGGAAGAGATCAGCGGTTTGGCCCGATGCCCGTTTGACGCCAAGCAGACGAACGTTGCCCTGTTTGCTGATGGTAAGCTGTACTCAGCAACAGTGGCTGACTTCCTGGCCAGCGATGCTGTGATTTATCGCAGCTTGGGAGATGGATCTGCCCTTCGCACCATCAAGTATGACTCCAAGTGGTTAAAAGaGCCACATTTTCTCCATGCTGTGGATTATGGggattttgtttacttttttttcagagaaatcGCAGCCGAGCACAACAGCTTGGGAAAGGCGGTTTACTCCAGAGTGGCTCGGATCTGTAAAAATGACATAGGAGGGTCTCAGCGGGTGCTGGAAAAACACTGGACATCTTTTGTTAAGGCTCGCCTGAACTGTTCTGTTCCTGGAGAATCGTTTTTCTATTTTGACGTCCTTCAGGCTATTACGGACATCATCGACATTAATGGGGTGCCTTCTGTGGTTGGAGTTTTCACCACCCAGTTGAACAGtaTCCCTGGCTCCGCAGTGTGTGCGTTCTCCATGGAGGACATTGAGAAAGCATTCCGTGGCCGTTTCAAAGAGCAGAAGACGCCAGATTCAGTGTGGACGCCATTTCCAGAAGAGAAGCTGCCCAAGCCCAGACCCGGCTGCTGTGCAGGACATGGTTCAGCTGAGTCTTACAAAACCTCCATCGAGTTTCCAGACGAGACCCTTCAGTTCATCAAGTCACACCCTCTCATGGACGCCTCAGTCCCCTCCATTGGAGACGAACCGTGGTTCACCAAAACAAGAGTCAGGTACAGGCTCACGGCACTCGCTGTTGACAACACAGCAGGACCCCATAAGAACTACACTGTGGTTTTCATTGGCTCTGAGGCAGGCATCGTGCTAAAAGTTTTGGCCAAGACATCCCCTTTGTCTTTGAATGACAGTGTCCTACTGGAGGAGATTGACGTTTTCAACCAAGCCAAGTGTTTATCCAGCAATGAGGACGATCGGCGAATTCTGTCTTTCCACCTAGATAAAGACACCCACACCCTCTATGTGGCCTTTTCCAGCTGTGTGGTCAGAATACCACTCAGCCGCTGTGAACGACACAGTTCCTGTCAAAAGTCTTGTATTGCTTCTAGAGACCCGTACTGTGGCTGGATGTCACATGGAGCTTGTGAGCGTATTCCTGGAGCTATGCAAACTGGTTATGAGCAAGATGTTGAATACGGCAACACAGCTCACCTCGGCGATTGTCATGAATTTTTGGCCACTACATCAGCGCCAGATTTCAAATCATATGGCGACCCAACCTCTGACATGGAGTTGCCATCATCGTCAGTCACAGTGCCCGTGACCTCTGAACCCATACAATCACCCCAAACCATCCCCACTCAGATACCCCAACTCTTTGGCTCACGGAAATTTGTGCTCCATGATGACCCAGCCACTTCACATTCCGTTGAGCATATACCAGGTGTGCTGGAGGGTGTGTGGGAAATACAAGCAGGTGAATCTAACCAGATGGTGCACATGAATATCCTTATCTCCTGTGTGTTAGCTGCATTTCTGCTTGGTGCATTCATCGCTGGCATGGTGGTTTACTGCTATAGAGATGCCTTCCTTCGCACTCCACGCAAGATCCAAAAAGATGCAGAGTCAGCACAGTCCTGCACTGATTCCACTGGCAGCTTTGCCAAGCTCAACGGTCTGTTTGACAGTCCTGTGAAAGAGTATCAGCCCAATATGGATACTCCCAAGCTTTACACCAACCTGTTAAGCAATGGGAGGGAGGTGCCAACCACCGGAGACACTAAGACAATGCTCCTGACCGGACAGCCACCGGAGATAGCAGCACTACCTACACCTGAGTCCACACCTGTGCTGCAACAGAAGAGCCTTCAGCCAATTAAGAACCAATGGGAGAGAGCTCACGGAAAGATAAGTGGCTCCCGCAAAGATGGGCCACCCAAAAGCCCACAGTACCTTCACTCCACTCCCCCTCCTCATTCTACCATCAGCAACCCCCACATCCCCAGTGCCGTGGTACTGCCCAATGCCACACATGAGAACAGGGCATCCTTCAGTACTCCTGAAGGGCATCAAGCAGAAAAGAAAATCCAGAATAGCGATCAACATGGTTCCAAATCTGGCCGCAAGGACCAGCGACGCACTGTGGATGCCAGGAACACCCTGAATGACCTCTTGAAGCACCTGAATGATAGCAACCCAAAAGCCATCATGGTGGAGATGCCCAAATCCAGACAGCACCTGATGCTGGAGCCCATTGTAAGCCCAACAGAGATTCCCCCCAAAGTCCCAAGCCGAGAGGCCTCCTTGTactctccctcttcctctctgCCCAGGAATAGCCCGACAAAGAGAGTGGATGTGCCGACTACACCAACATCGCCCACAGGGCAGATGGGCACTCTTGAGAGACAGCGGTATCACCGCAGCTCATCCCAGCGACACTCCATATCCTCGCCACCCAAAGGGCTGCATTCACCTAGCGGGGCCATAGTGTCCCGGCAACCTAGTATGAACAGAGGTGGGTACATGCCCCCAACTCCTACCCCACCCACTAGACTAGACTCTCATGGGGTACCAATGGCTATGACTCCTTCTGTATCCCGGCAGAGCAGCTACAGTGGTCATGGATCTTTACCACGAACGTCCATCAAACGGACAGCATCATTAAAGCCCGATGTGCCCCCCAAACCCAATGGCTTTGCACCACAGACTGCACAAATGAGGGCAGTGAACAAGTATAGCTACTGAAATGCTAAGCAGGATCTTACTCGACGAATGGACAGTGGGAGTAAAAACGCTTGGCCCGCAAAGATATGGCGGGCCAGTCTCCGTTCCCTATGAAGGGAAATGAATCGGATGGCAGAGCTTCTGTTTCGGGTAGTTGTGCTAGTTCTCAATGACGTTGTCCTGTCACGCTTCAGTGGTAGGTAACGGATTCTGATCTTTAAGGCGGCAGGGACGCCTGAGGTCAAGGGTCACAGCTGACATGCAGCATAAAGCAGCTGCGAAGTTGTTGTGGCGATCGGGGCAGCGTATGCTCCCCTATGCACTGTTCTCCCCATCAATGTGAACTGTATTTGTTAGACTGTTTGGAAAATATGATATTCTTGCTTGGATATCTCTCCAGAAGACAGGCAGAGTGAAAGGGACatgttgtgtgtctgtgtttgattAGTCTCTGGGGCTAACCAGTGTGCATTCATTGaccatgtttttttcagtaaactGAGAACAAGCTTGAGTCATCGCTGTCATAAAACTAAATCCCATTTATGGTGCATTAACATCAGATGTGTTTGGACACAGAATCCAgacattaattaatcatttctGCGTGCAAAAGAAATGTCCAGGGCTCTTGCTTGGACTACTGATTTTAAAACTCACAGGGTAAAAGTGCCCTCAACATTTGTGCTGCTAAGTGTAGACGATGACAATGTTGACTCCAGTGTGGCATTTCATGCAGAGGTTCTGTGTCAAGCTGTGTCAAGCTTTTAAAACCACAGGCTCAGCACAGGATCACACTGGTAAAATGTATGATGttctctttggtcatttttaatttcagaaaatCACTGTGGGAATCCTGTAAATCCCATAAAGTCAACTTTTAGCTATGACGTAAAGCAGATCATTGATCAACCTCTCTCCTTTCCTACATGCCAAGCAAGCACTGCTGTTGGGTCTGTGAAGTTCAAGACcatttttctctccttttaCAATTCTTGAATATTCAAGTTATTGCAGTTTACACCATTTCAGAGAGCTTGCTTTTTGGTTCCTGGGCAAAGTATTACATAAAACTGCAAACAGCACATTCCTTCCTATAAACCACTACTCAACTCTGTGGCAAAACCCAAACTCAGCTTTATACTAGACCCTATTACGCTTCACTTTGcttgtttaaaagaacagaggCCTCAATTGCATAGTCACTATAAGTGTACAATCACTGCAATACCTACCAGTGTGTCTTGCAGAGTCGTGCCAGTGATAGCGTTATTGTAAATATACTACTATTTAAGTGTGGATATTTTCAAGGCAAGTTTACCTGGATCAGTGTATTTGTGTGCCTTATTAAAGTCATGAGAGCGAAGTTTGGACATTTCACTGTCATCAGACAAATAATTTTTGGTTGGATATGAGCAGGGAGGCTACCCAAGGGTGAAAATTTAGGAATCGGTCATTGCAAAACCTATAATGATTGACCAGTAATATGAAAATTTGAAGTGGGGG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06842 SEMA6; semaphorin 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006253145.1 lncRNA upstream 29841 10601124 ~ 10602846 (+) True LOC122362658
TU185086 lncRNA upstream 206847 10422822 ~ 10425840 (+) False gldn
TU185093 lncRNA upstream 223087 10409318 ~ 10409600 (+) True G125369
TU185092 lncRNA upstream 223871 10408129 ~ 10408816 (+) False LOC122362497
XR_006253126.1 lncRNA upstream 223941 10404414 ~ 10408746 (+) True LOC122362497
TU185276 lncRNA downstream 67820 10785905 ~ 10787023 (+) True G125470
XR_006253185.1 lncRNA downstream 127367 10845452 ~ 10849689 (+) True LOC122363043
TU185294 lncRNA downstream 180079 10898164 ~ 10905562 (+) True G125481
TU185295 lncRNA downstream 180079 10898164 ~ 10920333 (+) False G125481
TU185293 lncRNA downstream 218280 10936365 ~ 11044066 (+) True G125480
XM_043263966.1 mRNA upstream 209848 10416013 ~ 10422839 (+) True gldn
XM_043264811.1 mRNA upstream 271375 10352575 ~ 10361312 (+) True acadl
XM_043216704.1 mRNA upstream 296934 10328942 ~ 10335753 (+) True lysmd2
XM_043264789.1 mRNA upstream 312039 10297497 ~ 10320648 (+) True tmod2
XM_043264595.1 mRNA upstream 418201 10209353 ~ 10214486 (+) True bcl2l10
XM_043264900.1 mRNA downstream 26302 10744387 ~ 10761544 (+) False LOC122363031
XM_043264902.1 mRNA downstream 37490 10755575 ~ 10761544 (+) False LOC122363031
XM_043264901.1 mRNA downstream 37514 10755599 ~ 10761544 (+) True LOC122363031
XM_043264007.1 mRNA downstream 141728 10859813 ~ 10870796 (+) True vwa7
XM_043264839.1 mRNA downstream 154230 10872315 ~ 10877836 (+) True LOC122362996
TU184804 other upstream 1267199 9359436 ~ 9365488 (+) True G125192
TU184604 other upstream 2095739 8176353 ~ 8536948 (+) True G125041
TU184436 other upstream 3454411 7177839 ~ 7178276 (+) True G124920
TU184430 other upstream 3459667 7172626 ~ 7173020 (+) True G124914
TU184395 other upstream 3605552 7026318 ~ 7027135 (+) True G124881
TU185257 other downstream 106889 10824974 ~ 10837276 (+) False G125461
TU185261 other downstream 106889 10824974 ~ 10837276 (+) True G125461
TU185314 other downstream 250000 10968085 ~ 10969767 (+) True G125496
XR_006253172.1 other downstream 508030 11226115 ~ 11231714 (+) False ccnl1a
XR_006246968.1 other downstream 516246 11234331 ~ 11237147 (+) False selenot1b

Expression Profile