RNA id: TU223417


Basic Information

Item Value
RNA id TU223417
length 241
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G150964
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8982116 ~ 8982356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTTTGCTGCCCCTGCGGGACGGCACAGGAGGTGGAGGTGGCAGAGAGGTCACGGGGGCCGTGGCGGGGGCAGGTGGAGGTGGAGGCGGAGGTTGGGGTGCCCCCAGAGGGTCTCGTGCGATCAGCATCCTCACATGAGTACCGCAGGCCTGCAGCACCTGCACCACCTGCTCACTGGCCAGACCTCGAGTGGACGTCTCACCGATGCGCAGGATGTGGTCACCCGTTCTCAGTCTCCCG

Function

GO:

id name namespace
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223416 lncRNA upstream 351 8981487 ~ 8981765 (+) True G150963
TU223415 lncRNA upstream 8210 8973646 ~ 8973906 (+) True G150962
TU223411 lncRNA upstream 8831 8966543 ~ 8973285 (+) True G150959
TU223405 lncRNA upstream 34406 8947116 ~ 8947710 (+) True G150953
TU223404 lncRNA upstream 35922 8944436 ~ 8946194 (+) True G150952
TU223420 lncRNA downstream 12850 8995206 ~ 8995483 (+) True G150967
TU223423 lncRNA downstream 31178 9013534 ~ 9013852 (+) True G150969
TU223424 lncRNA downstream 43545 9025901 ~ 9029910 (+) True G150970
XR_006247700.1 lncRNA downstream 86376 9068732 ~ 9071172 (+) True LOC122327612
TU223441 lncRNA downstream 162855 9145211 ~ 9147388 (+) True G150983
XM_043222327.1 mRNA upstream 89917 8890622 ~ 8892199 (+) True pdzk1ip1
XM_043223371.1 mRNA upstream 95688 8880269 ~ 8886428 (+) False tal1
XM_043223444.1 mRNA downstream 13615 8995971 ~ 9004905 (+) True tm2d1
XM_043222439.1 mRNA downstream 215668 9198024 ~ 9223536 (+) True frem1b
XM_043222440.1 mRNA downstream 215693 9198049 ~ 9223536 (+) False frem1b
XM_043222443.1 mRNA downstream 241454 9223810 ~ 9227301 (+) True atpaf1
XM_043222442.1 mRNA downstream 246052 9228408 ~ 9235230 (+) True rab3b
TU223398 other upstream 60149 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 62336 8919279 ~ 8919780 (+) True G150945
TU223385 other upstream 79805 8901143 ~ 8902311 (+) True G150940
TU223378 other upstream 90035 8890643 ~ 8892081 (+) False pdzk1ip1
TU223279 other upstream 364511 8614289 ~ 8617605 (+) True G150862
TU223418 other downstream 5830 8988186 ~ 8988691 (+) True G150965
TU223769 other downstream 472945 9455301 ~ 9530165 (+) False march2
TU223817 other downstream 595323 9577679 ~ 9580151 (+) True G151232
TU223952 other downstream 905844 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 941191 9923547 ~ 9963634 (+) False LOC122328159

Expression Profile