RNA id: TU223769


Basic Information

Item Value
RNA id TU223769
length 3350
RNA type TUCP
GC content 0.48
exon number 6
gene id march2
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9454838 ~ 9530165 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCGGAGGCCGAGCCGAGTCGTCTGCTGGAAGGATCAAACCCAAAACAGGCTTGTACTTCTACCTTGCCGTTCGCGAACCGGGGCCGCTTTTAAAAGGACTTCACCCTTAAAGACACCAGCTCACCATGGAGAACCAGAAGTGGTAGGGTCTTCGTGACTTGAGGTGTGGGAGCGAGGCTGCTCCTGAATCCCCCGGTGCCCCCGCCCTCCTGGACGGCCCCGAAATGACCACAGGGGAGTGCTGCCACCTCCCAGGCTCCTGTGCGACTGCACTGGCAACGCTGCCCTGTCCAAAACCGTGGAGGAGGCCGACAACCGCCGGCCCAGTATGTCACGCAGGTCACGGCCAAAGATGGACGCCTGCTATCTACTGTTATCAAAGCCCTGGGCACTCAGAGCGATCGGCCGATTTGTCGGATCTGCCACGAGGGTCAAGACGTGTGCAATAGCGAGGGGCTTCTCTCCCCGTGCGACTGCACCGGCACGCTGGGCACGGTCCACAAGAGCTGCCTGGAGAAGTGGCTGTCCTCGTCTAACACCAGCTACTGTGAGCTGTGCCACACCGAGTTTACCATCGAGCGCCGGCCCCGGCCCCTCACAGAGTGGCTCAGGGACCCGGTCCCAGGAATGAGAAGCGCACCCTCTTCTGTGACATGGTGTGCTTCCTGTTTATAACCCCCCTGGCGGCCATCTCAGGCTGGCTGTGTCTACGGGGAGCACAGGACCACCTGCACTTCAACAGTCGCCTGGAGGCCGTCGGCCTCATCGCTCTGACCATCGCGCTTTTCACCATCTACGTCCTCTGGACACTGGTCTCGTTCCGCTACCACTGTCAGCTGTACTCGGAGTGGAGACGAACCAATCAGAAGGTCCGCTTGCTCATTCCCGACACCAAGGGTGCACACTCCACCCAGCATTCCTTGCTTTCCACGAAGCTGCTGAAAAAGACAGCAGACGAGACCATAGTATGAGAGACGTGGTGCGGGGGGGAGCGGGGCCCGATGGCGGTGGTATTAGTGTGCTACAGGTTCTTGACACGGCGTCGTCGACTAGAGCCGCGGCATTTTTGGATGCATTCTTTTCTATTTAATCCTTTTTATCTAAATATGTGagcacttcatttatttaatttttttttcacgagtctcttttaatgtttttttggagcCTTTAtaagtgtgttgttttttatttattcgggGGCTTGAACAGCCAGGCTGAGGCCCCGTGCTGTTCAGTATGCATTGTATTTGAAACAATCGGAAACCTAACTTATGTGTGTAGACGATTCCTTTGAGCGCAGCGGCGAGGGATTACGACTCGAGTACATACGGCTGCTGAAGCTTAAAACCAAACCTTTCTTTCGTTTTTCGATGTATCGTTTTTCTACTCATCTACCTTCGAGTACTTTCCATCTTAATCCGACGGAGTCATGCCTAAGCGAACGTGGTCCTCGTGGCTCCTGTACGATTTAGTCAagatataaatacagaaatatacacacacacacactaagcgAACAAGTAAGCTCTAAGCTCTGTATTACAGGGCCGTTTGCCCGGGCAATGAATGTGGAGGCTGATGTATATCCGCGAGAGCGAGTGCAATAAAACCCCGCCGTCGGCATGACTCTGCTGTGAACACGCGCAGGTTTTCATGCATGCCTATTTCATTTCGCAAATCTCATCAGATCGGTGACCGTTCGTGGGTTTCGATTTCGCGCACAGATCAAAGGCTATCTGTCCCCGAACCGAGCGGCCTCCGAACAACGTTAAATAGCATGCGGTGGTTTTAAAGTCGTAGCACTTTCTGACAACGTAGCCTAGATGTGAGCCGAACAAATGTAGATACGTGTACGCTTTTGGGATGCAAATACGTGGCGACTTTATATGTTGTTGTCGAGTCGTGATAAGCGCAGATGCAAACAGACCTCTACAGTTCATTGTTGAATCATTTtcgaaataatttttttttttaggtgagtGTTTAAAGATGAATGTGTATGCGTGTTTACAGTATGCGTTTTGTGAGCTCCGGCTCTTTGTGCTGTTTAGTTACAGCATCAAATGCCCGAGGTTGAGGATGGCGTGCTTGGGATCTTGTAGCAGTTTACTTTTGTGGAAGATGCAGGTCAGGCCGCGGTAGGAAGAAGCAGTTGCGAAGCGGTTTGCCAGACCAGTAACGAAACCGTCGTCCGTGAACGACACTACAGTGTTTAAACAAAGCCGTCTTTTAGCTGTGTGTCGAATTGGTGCGAGATGATTCTGCAGAACGCCAACCATCAGATTTTTTTCGTTGCAATGGGATAGGCAGTGTTTGCACATTTTCCACACTTAATGCGGACCCTTTCGCGCCTTATGCGCTCGACGTGGAAGATCTGGGTCTAGAAAATGCGCGGGAAAGTTCTCTGAGGGAATTGTTCACACGTAGATGAAAATCTCGTTATTCGCTCGCCCTAATGTCACTTCAAACTGTTAATCGCGAAACAACTTTGGCGAATCATTTCTAGAATGCGCGCGATGCAAATTTACGTCGACGCTGTCAGGTTTCAAGATCGCAATTAAAAGGTTCGTAGGAAACATGCGCCCCTTTCAGTCCATACCAGAGTTTTGCGCGATAAccagaaagaaataaaagtggCAACCTTCTGCAgatctttaaaatgcatagatTTCAGTTGATCTGCCACTTAtagcttttgtttttgacacttttttttacaatttttttttcgtctttcagttcttgacgGAAGCTCGGTTCTAACATTCGataaaatttcacaattctgCTTTCTAAACAACACCAGTGCTTAGTACTTTTCTCGGTTCAGTTTCTGATTATTTTGAATTGTctggtattttaaaaaatcctggCTTTTGTCTCACAATCCTATTCTGGGAAGAAACGTCTGACTTGGGAGGCGTTAACTCTAGTTACGTGAAAGTTACGTGAGAAACTCTAGTTACGTGAAAAAAAGCGACTGTAGGCTAAGAATTCAGGAAATAGTCGAAATCGTGAGATATGAACTTGTCATTGTTAGAAATAAGTCAGAATTGTTAGATTTGGTTTTAACAGCATGTgagtttggaataacatgagggaGGGGGGGGGTGAATATtgacagaaaattatttttggccGAACTGTTCTTTTAAGGCTAATGAAACGAGCTACCTAAGGTCCTTGGATTCTTTATTGTAAATTCTGCTGCGTCTCAATTGTAAATGTGTAGATAAACTGATGTCTCTGTTGTAAGAAGTGTCATGTGCTGTAGGTCCAGGGTTCTgcacgcgcgtgtgtgtgtgcgtgcgcgcgcgtgtgtacgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223740 lncRNA upstream 89979 9360428 ~ 9365322 (+) True G151178
TU223722 lncRNA upstream 172297 9277690 ~ 9283004 (+) True G151163
TU223441 lncRNA upstream 307913 9145211 ~ 9147388 (+) True G150983
XR_006247700.1 lncRNA upstream 384129 9068732 ~ 9071172 (+) True LOC122327612
TU223424 lncRNA upstream 425391 9025901 ~ 9029910 (+) True G150970
TU223818 lncRNA downstream 48906 9579071 ~ 9580151 (+) False G151232
TU223901 lncRNA downstream 70391 9600556 ~ 9667133 (+) True G151294
TU223922 lncRNA downstream 231989 9762154 ~ 9762419 (+) True G151308
TU223951 lncRNA downstream 358035 9888200 ~ 9893489 (+) True borcs8
TU223957 lncRNA downstream 364881 9895046 ~ 9895327 (+) True G151333
XM_043223186.1 mRNA upstream 954 9449289 ~ 9454347 (+) True rab11ba
XM_043223187.1 mRNA upstream 954 9450451 ~ 9454347 (+) False rab11ba
XM_043223815.1 mRNA upstream 94986 9283786 ~ 9360315 (+) True rabgap1l
XM_043223817.1 mRNA upstream 94986 9344492 ~ 9360315 (+) False rabgap1l
XM_043223818.1 mRNA upstream 94986 9349914 ~ 9360315 (+) False rabgap1l
XM_043223913.1 mRNA downstream 72285 9602450 ~ 9612501 (+) True tm6sf2b
XM_043223912.1 mRNA downstream 83714 9613879 ~ 9619115 (+) True hapln4
XM_043223153.1 mRNA downstream 354347 9884512 ~ 9886217 (+) True LOC122327676
XM_043223154.1 mRNA downstream 354350 9884515 ~ 9886217 (+) False LOC122327676
XM_043223155.1 mRNA downstream 357998 9888163 ~ 9893507 (+) False borcs8
TU223418 other upstream 466610 8988186 ~ 8988691 (+) True G150965
TU223398 other upstream 533334 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 535521 8919279 ~ 8919780 (+) True G150945
TU223385 other upstream 552990 8901143 ~ 8902311 (+) True G150940
TU223378 other upstream 563220 8890643 ~ 8892081 (+) False pdzk1ip1
TU223817 other downstream 47514 9577679 ~ 9580151 (+) True G151232
TU223952 other downstream 358035 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 393382 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other downstream 398514 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other downstream 400974 9931139 ~ 9963634 (+) False LOC122328159

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040364 True 1701 mRNA 0.50 5 NC_007133.7 17509422 ~ 17521293 (+)
grasscarp (Ctenopharyngodon idella) CI01000030_02104123_02108608.mRNA True 2024 mRNA 0.47 4 CI01000030 2104123 ~ 2109882 (+)
bowfin (Amia calva) AMCG00005936 True 6787 mRNA 0.44 5 CM030142.1 12896675 ~ 12907152 (-)