RNA id: TU225052


Basic Information

Item Value
RNA id TU225052
length 217
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G152068
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12426756 ~ 12426972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gttgaaggccgaactaaagtccacaaacaggatcctcacataagtccctggtctgtctaggtgttgcagaacataatgcagtcccatattgactgcatcgtccactgacctgtttgctttgtacgcaaactgcagggggtccagtaggggtcctgtaaagtccttcagataacccagaaccagtttttcaaatgatttcatgaccacagacgttaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224994 lncRNA upstream 94911 12306554 ~ 12331845 (+) True G152028
TU224906 lncRNA upstream 150148 12048418 ~ 12276608 (+) False LOC122327127
TU224903 lncRNA upstream 159261 12241277 ~ 12267495 (+) False LOC122327127
TU224925 lncRNA upstream 159590 12048418 ~ 12267166 (+) False LOC122327127
TU224917 lncRNA upstream 161064 12227233 ~ 12265692 (+) False LOC122327127
TU225093 lncRNA downstream 152310 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 152310 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 153867 12580839 ~ 12620676 (+) True G152092
TU225101 lncRNA downstream 162941 12589913 ~ 12629300 (+) True G152101
TU225074 lncRNA downstream 177116 12604088 ~ 12655074 (+) True G152083
XM_043222229.1 mRNA upstream 2054 12421681 ~ 12424702 (+) True LOC122327055
XM_043222228.1 mRNA upstream 5099 12414582 ~ 12421657 (+) True LOC122327054
XM_043223781.1 mRNA upstream 14915 12408361 ~ 12411841 (+) True LOC122328076
XM_043223780.1 mRNA upstream 18524 12398320 ~ 12408232 (+) True aars2
XM_043223562.1 mRNA upstream 29310 12385990 ~ 12397446 (+) True rrbp1b
XM_043223486.1 mRNA downstream 42146 12469118 ~ 12471335 (+) True LOC122327840
XM_043223942.1 mRNA downstream 46281 12473253 ~ 12478935 (+) True LOC122328225
XM_043223457.1 mRNA downstream 58233 12485205 ~ 12503977 (+) True vasna
XM_043222265.1 mRNA downstream 109125 12536097 ~ 12542684 (+) False dnaja3b
XM_043222266.1 mRNA downstream 109125 12536097 ~ 12542684 (+) True dnaja3b
TU225049 other upstream 2834 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 2834 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 81006 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 81006 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 132039 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 680534 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 682723 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 682729 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 682838 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 682843 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile