RNA id: XR_006247605.1


Basic Information

Item Value
RNA id XR_006247605.1
length 2476
RNA type transcript
GC content 0.35
exon number 4
gene id LOC122327162
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13107506 ~ 13112733 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTCAGTTGTTACCACTTGCTTCAGATGTGAAATTCCCATTACTTTTGTAGAATGGTGCACTGAAATGTTTccttaatgtttaaataaccAAGAATCTTCTTCCAAAACACAtgtaaaactgcacattttagtTCCATCTGACTTAAAGCAACCAGTCCTGCATGGTTTGAAAGACATTTTCTCTGCAAGTCTGTCAGACTTTTGCTTCCTCCCTTGTTTAGTTTCTCTTTAGGTGAGAATGAGGATGTTCTGGCCATCCAATTAAAAACCACAAAACGCACTGTACTTGCCCAATCGCCAGCTTATCTCAGCTCAGTTTTTTCACCCGTCTTTGagtcaacaaaacattttgaggAACTACAAAGAAGATCGTTATGGATTGCGCCTAGctatatttaaagaaatcagATATTGAGAACACATCTGGGATATTATTCAGTTCCATTCTCCTGGGACAAAGGGATGTCATCTCTTTTCGTCTCCTCTGAGTCTCTGCTGCTGTCAGACACTCTCCTGTGTCACTTAGCCCAAGATGAGGCTGAGATGATCTTTACGAATTGAGGATTTAGGTGAAAAAATGACTCACATATAAGGATTTAACAGGAAGCTCTGTGTACTTGTTCTGGTCTTTCTGTAATCAAAAACTGAAGTTAAGATACTCGGGTTGTCTATTGACACGATGGAAGCAGGATTATATAAGACATTATATAACACATTCCCTTCAAGAATCAATTTCCAGAATACAGCTTCTAGAGTCTAGAGTCTAGAGGAAGCTTCACTCTCATATTCATGTAAGTAACTGATTAAATGTAaccattaaaaagtaattgGGACCACATCAAATCACATGTATTCATACCATATTGCTATAATCTAGCAAattataagatttttttgtcatgtacaaaattaaaacttaatcaATTGGTCTTGAAAATACTATAGTAAACTTACAATCGACCAACAAATACCTGGTGCGCGTGCGCTTGTTACTCGACGTCACTTGTCTGAGCAATGCGGAAGAGTTCCTTCCTGTCGTTTCCTGTTTTAAATTGATagtatttaaacttaatttcagcatttaatgtacatttttatctagattaaatattatatttaagtaaaaccACGATGATGAGGTATGTTTAATGAATTGTGAATGAAGCTAATTTAAACAAACGTGTTGTCCTTCACCGATTTGACCGAAGGCCTGCGTTAGTTCCTGCAAATATGAGTATATCTGCCTGCTGTATTTTGGTTGTTGGTTGCTTTGTTTAAGCTAGAGTTAGGATGGAAAGATTAGTTAATTCTATTCATTCGTAATTCATAACCGGTTTATAGCTGTaactatattttgtaattattagcGATTAGCATTAGTATTTTGTATTGGGCCTACCTTATTTCGTCTCTCAGAACATGTGCAATTCACGTTAAGGGTAGAAAATTTATTTTGCCCTGTTTCTGCAGATGCTGCTTCATCTGTGTGTGCGCAGTGCTAATAAGTAAAGTGTGTCTGCAGGTCACGGTAGAAGCTGCAGTCGGTGGTTCTGTTATTTTGCCATGTTCTTTAACTGCAGAAGATATTAAACTTCAAGATATTGATGTGCACTGGAGACAGAATGACAGCAAAATTGTGCATGATATAATTAAGGGGGAAGATTCAGTAGCGATACAGGACCCAGTGTTCAAGAAAAGAGTTGAAACTTTCCCTGATGAGTATGTGAGAGGAAACTTTTCCATCAAACTCAACAATCTTCAACACACTGATGCAGGAAAATTCATCTGCTACATCACACCGTCGTCTGTATCTCAGACTGTAGAGCTGATCATCAATGGCTCAAGATCAAAAGGAGGAGCTGACATTGAGGGCAAACCATTGCTCTGGGTTTACATTGTAATACCTGTATCAATAGCATTTATCTCCAGTTTAATCATATTTtgctggaggaaaaaaaaatgtttcttctgtttCAAACTGAACGGATAACAGCAATAGACGATGaattgcaaaacatttctgattatgcTTTACTAgctgtttttctatttattgaAGTTTCTATTTATTGAAGCTTCTTCAGGACTTTGttaacacactttatttttttaagttttaagttttttttttttttttattatggaaTTGTTAGATGCCAGTGTTTCTTGTAACAACTATGCAAAGATTTCAAAACCAGTATCATATTAAAGTGtttcttgttattattttaagagTGATGTTAAGCCTGATCTTGTGATGGCTGtgcctttaaattaaattatggcCCTGTAAAATGTTTGATACTGATTGTCGTGACATTCcaatgtttatatgttattCCCTAATAACAACTGGTAAAATAACATCCTGGTAACTATAAAGTTGGTTCTACATGCTTGCTatgaagttgttgttgttgggttttttgtgtgtgtgtttgattagctaataaaatattaaaactcaatTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247610.1 lncRNA upstream 3439 13101108 ~ 13106256 (+) True LOC122327165
TU225244 lncRNA upstream 10939 13090310 ~ 13098756 (+) False LOC122327156
TU225243 lncRNA upstream 30078 13067414 ~ 13079617 (+) False LOC122327156
TU225239 lncRNA upstream 53809 13055348 ~ 13055886 (+) True G152196
TU225238 lncRNA upstream 57866 13050950 ~ 13051829 (+) True G152195
TU225258 lncRNA downstream 3705 13116438 ~ 13121691 (+) True G152205
TU225246 lncRNA downstream 8992 13121725 ~ 13148807 (+) False G152200
TU225249 lncRNA downstream 13101 13125834 ~ 13148807 (+) False G152200
XR_006247614.1 lncRNA downstream 60000 13172733 ~ 13175326 (+) True LOC122327169
TU225740 lncRNA downstream 65103 13177836 ~ 13180275 (+) False LOC122327212
XM_043222348.1 mRNA upstream 30058 13075411 ~ 13079637 (+) True LOC122327156
XM_043222349.1 mRNA upstream 30058 13075651 ~ 13079637 (+) False LOC122327156
XM_043222426.1 mRNA upstream 34782 13063303 ~ 13074913 (+) True LOC122327210
XM_043223366.1 mRNA upstream 153387 12952151 ~ 12956308 (+) False si:dkey-246e1.3
XM_043222428.1 mRNA downstream 63694 13176427 ~ 13180221 (+) True LOC122327212
XM_043222430.1 mRNA downstream 89956 13202689 ~ 13226838 (+) True senp7b
XM_043222337.1 mRNA downstream 165638 13278371 ~ 13302756 (+) True abi3bpb
XM_043222338.1 mRNA downstream 165639 13278372 ~ 13302756 (+) False abi3bpb
XM_043222339.1 mRNA downstream 165641 13278374 ~ 13302756 (+) False abi3bpb
TU225049 other upstream 685773 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 685773 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 763945 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 763945 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 814978 12293400 ~ 12294717 (+) True G152032
TU225829 other downstream 270420 13383153 ~ 13383777 (+) True G152558
TU225846 other downstream 304731 13417464 ~ 13418407 (+) True G152565
TU225879 other downstream 463005 13575738 ~ 13681947 (+) True G152584
XR_006247779.1 other downstream 854374 13967107 ~ 13967225 (+) True LOC122328230
TU226044 other downstream 927991 14040724 ~ 14042521 (+) False LOC122327219

Expression Profile