RNA id: TU225239



Basic Information


Item Value
RNA id TU225239
length 539
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G152196
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13055348 ~ 13055886 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTTTCACATTAGCAATGCTAGAAAATTGGTAATATTTCCTGatctcattaaattaataaaagcagttatacttgttgatggcaatgtatcattgaaatgctaagggtaagagaaaaaaaaaacgtttcttgttAATACCAACGGTTATGGCAGTTCAAACATTTGTCAACATTCTTCTCGGTAAGGGAAAGGTGAGGAAAAAGGGGATAAACGTGAAGgggaaaggaggaggaagccCACTATTGTGGTTTCGGCGTTCCGATGTAACTCACACACCATAAACACACAATGCATTCAACTCAATGGACAACAGAGGTCTATTCGCTAAGAGCTAGCCTGATGCTAACAGTTTGCATAGGTTTCAATGCCAACACATTAGATTCAGTTATCCTAGCCTCTGTTCACGAACTTCAAATATGGCGCCGGAGGACTGCGCTTGCGCACTTTGAAGTTAACTCGGAAACGGCGTCCTAGGACTTCCGCGTCGTTACTATGGATACGTGCAATTCGCTATTGTACGAGTTCGGCCCACCCGAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU225238 lncRNA upstream 3519 13050950 ~ 13051829 (+) True G152195
TU225233 lncRNA upstream 27082 13017243 ~ 13028266 (+) True LOC122327168
XR_006247613.1 lncRNA upstream 27254 13017262 ~ 13028094 (+) False LOC122327168
TU225195 lncRNA upstream 84990 12901270 ~ 12970358 (+) False G152161
TU225193 lncRNA upstream 84990 12966323 ~ 12970358 (+) True G152161
TU225243 lncRNA downstream 11528 13067414 ~ 13079617 (+) False LOC122327156
TU225244 lncRNA downstream 34424 13090310 ~ 13098756 (+) False LOC122327156
TU225248 lncRNA downstream 45174 13101060 ~ 13161699 (+) True G152200
XR_006247610.1 lncRNA downstream 45222 13101108 ~ 13106256 (+) True LOC122327165
TU225258 lncRNA downstream 60552 13116438 ~ 13121691 (+) True G152205
XM_043223368.1 mRNA upstream 99040 12950609 ~ 12956308 (+) False si:dkey-246e1.3
XM_043222426.1 mRNA downstream 7417 13063303 ~ 13074913 (+) True LOC122327210
XM_043222348.1 mRNA downstream 19525 13075411 ~ 13079637 (+) True LOC122327156
XM_043222349.1 mRNA downstream 19765 13075651 ~ 13079637 (+) False LOC122327156
XM_043222355.1 mRNA downstream 55596 13111482 ~ 13112733 (+) False LOC122327162
XM_043222428.1 mRNA downstream 120541 13176427 ~ 13180221 (+) True LOC122327212
TU225049 other upstream 631426 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 631426 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 709598 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 709598 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 760631 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 51620 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 53809 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 53815 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 53924 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 53929 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile