RNA id: TU225258


Basic Information

Item Value
RNA id TU225258
length 5114
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G152205
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13116438 ~ 13121691 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAtgtatattatgtgtttataCTCATTTCAGCATTGAGAGGCTGATGATGTACAAGTAGTGTCACGAAAATCAAGAGAAGGATTCAATAGTGGTGAACGACAGTTTATTATAAGATAAACAAGAGAGAAAGTCACTGATGGCGGTGGAGCTCGTGCAGCGCGAGGATGGAAAGCAGTGCAGGGACGCAATGGGCAGCCAATCCAAGCGTAATTCTCCGAAGCAGACCGACAAACAGAGCAACAtcagaacaggaactcaggacaacgGTGAGGATCTGACAATGAGAGTGGTGTTAGCTGGTCTTAAATAGCCCAAATAATGAGCCACAGCTGGGGCTGATCAGATCGCAATCATGAACTTAGACACACCCAACACTCAGCACatgacaaacagacacacaagatgatacaatgaatccatgaaccGTGACAGTACCCCCTCTCCTAAGAGCGCCCCCTGGCGCTCCCAGCCAACCTTACCCGTTGATTGTAATCATCGATAAGAGAGTGATCCAGAATGTCCCTGGCAGGAACCCAACTTCTCTCCTCTGGGCCATAAccttcccagtccaccaagtaATGGAATCCACGTCCCCTCCGCCTTGAGTCCAGAATGCGATTGACCGAATATGTTGGCTCCCCGTCTACGAGACGCGGCGGTGGAGGAACCGGGGCTGGCGGATTAAGGGGtgaatgaaaaacaggttttaatttagaaacatgAAACACAGGAATTCTCCTGTACGCTGGAGGAAGTTTGAGGCGGACTGTCACCGGACTAAGAACTTTGGTGACAGGAAACGGGCCCATGAATTTGGGAGCAAGTTTATTACAGACGGGGTGGAGAGGAATATTCTTAGTTGAAAGCCACACCTTTTGACCAACGACGTATACAGAAGGCTTTGACCGGTGGCGATCGGCCTGAGCCTTAGTGCGCCGTCCCACCCGGAGGAGGGTCTCTCGGGCCCTTCTCCAAGTGTGACGGCACCTCTGGATGAATGCGTGGGCAGAGGGAACCGCGACTTCGGATTCCAGACTAGGAAAGATAGGTGGCTGGTACCCTAGACTACATTCAAATGGTAAGAGGCCCGTGGATGACACTGGTAACGAGTTATGTGCGTACTCAACCCACGAGAGTTGTTGACACCAGGAAGTGGGATTCTGCGCCACCAAACATCGCAACACCCTTTCCAGATCCTGGTTAGCCCGCTCAGTCTGGCCGTTGCTCTGAGGATGGAAACAGAAGACAGACTAACGCTCGCCCCCAGCAAACGACAAAACTCTTTCCAAAATTTGGATACAAACTGGGGTCCCCTGTCGGAAACCACGTCCATCGGGAGGCCATGAATGCGAAAGACGTGATCAACGACAGTAACCGCTGTCTCCTTAGCAGATGGTAATTTAGGTGAGGGGATGAAATGAGCCGCCTTCGAGAACCGGTCCACTACAGTCAAAACAACCGTATTGCCCAGGGAGGGCGGAAGGGCCGTGACGAAATCTAGCGCGATGTAGACCAGGGTCTCGAAGGGACAGACAGCGGTTGAAGTAATCCCTCTATGGGTCGATTGGAAGCGCAGACTGAACAGGCCAAAACAAAATCCCGAATGTCCCGAGCCATGGCGGGCCACCAGAATCGTTGGTTAACTAGAAACCTAGTGCGTCCAATTCCTGGATGGCAAGCCACATTGGAACAATGACCCCACCGGATAACGTCGGACCTTAACCCCTCAGGCACGAATAACCGGTTCGGTGGGCACCCGGACGGAGGCGTTACCCCTTCTAAGGCTGTGCGAACCTTCGATTCGATCTCCCACGTGAGTGTAGAAACAATGAGTTTCTCAGGTAGTATGCACTCAGGAGACTACGGCCGTTCTGAAGAATCAAAGATACGGGACAGCGCGTCGGGTTTGATGTTTTTGGACCCCGGGCGGTATGACAGCGAGAAATCAAAACGACCGAAAAATAGTGCCCACCGAGCCTGCCTGGAGTTGAGGCGTTTAGCGGATCTGATGTACTTTACGTTTTTATGATCGGTCCAGACGATGAAAGGGGCCCCGACCCTTCTAACCAATGACGCCATTCCTCCAAAGCAAGCTTAACCGCCAACAACTCTCTGTTACCAATGTCATAATTGCGTTCAGCAGGGGATAATCGATGGGAGAAAAACGCGCAGGGGTGCATCTTATCCGAGGAAGCCCGCTGGGACAGCACCGCACCTACCCCCACCTCTGAGGCGTCGACCTCCACCACAAACTGACGTGTGGGATCAGGGGCTGTAAGAATGGGAGCCGAAACAAAGCGGCGCATTAGATTGGCAAATGCAGCCTCAGCTGCATTGGACCACCTGAACGCCGTCTTGGTGGAGGTCAAGGCCGTCAGAGGAGCGGCTAGTTGGCTGAAATTACGAATAAAACGTCGGTAGAAATTGGCAATCCCCAGAAACCTCTGCAGGGCCTTACGGGAATCAGGGGTTGGCCAATTCACCACAGCCTTGATCTTGTCGGGGTCCATGTGAATTCCCTCGGCCGAGACGATGTACCCTCCAGGTAGACATATGAACTGATCTACCATGTCTCTCAGCACATCATTGACGAGTGCTTGGAAAACTGCGGGGCAATTAGACAGCCCAAACGGCATGACCCGATACTCAAAATGCCCCCTGGGGGtattaaaggcagttttccactcatccccctCCCTTATGCGGACCAAATGGTAGGCGTTACGCAAATATAACTTGGTGAAGATGGATGCTCCCTGCAACCTCTCGAATGCTGAAGACATCAACGGCAAAGGATAGGTGTTCTTTACCGTGATGTTATTCAAGCCTCGGTAATCAATACAAGGTCGCAGAGAGCCATCCTTCTTcgcgacaaaaaaaaatcctgcccCCGCTGGAGAAGAAGGGCGAATGATCCCGGCTGCTAgagaatcagaaatatatttctccATGGCCTCCCTTTCAGGAACTGAAAGTGAGTATAACCTGCCTTTAGGCGGAGACGTACCTGGAACTAGATCTATCGCACAGTCATAGGGACGATGTGGAGGAAGAGAAGCAGCCCTGGACTTACTGAACACTTCCTTCAGGTCGAGGTACTCCTTGGGCACGTTTGACAGATTCACCGCCTCATCCTGAAACGAAACACAAGACACAGGAGAACAAGCAGACACAAGACAAGAGGCATAACAGTTCTCGCTCCACGCCGTGATTGAACTCTGGCCCCAATTGACCCTAGGGTTATGCCGAACCAGCCAGGGATGGCCAAGCACCACAGGGATGAGAGGTGAATCAGTCAATAGAAATTTAATTGTCTCTGTATGATTTCCAGATGTGACAAGTGTAACAGATATAGTGGAGTGAGTGATGTCAGGAAGGGCTTGTCCATTGAGGGCACTGACAGAGACCTTGTGACGTAGGGAGACAGTGGGAATGTGGAGTTGAAGGGCAAGAGTTCGGTCCAAAAGGTTACCTTCAGCCCCCGAGTCCAGCATAGCCGAACAGTCATGTCTTCCGTCTGCCCACTGCAGTCTTACCGGGAGGAGGGTGGTGGTTGAGGATTTGTTTAGTGATACTCCACCCGACAGTAACCTCAATTCTATCGCCGGGCTTGTGCTTTTACCGGGCAATCCACCAAAAAATGGCCTGATGCCCCACAGTACATACAAAGTCCTTTGGCTCTACGACGATCTCTCTCCTCCCGGGAAAGCCGAGCTCTACCAACCTGCATGGGTTCGGTGTCCGGTGAGTGACTGAACATGCATCCAGAGTCAACAGAAGAAAATTCCGTAACAGGTGGTAATCGCTGACGACATGCTCGCTGGTCACGTTGCTGTAATCGCGAATCCACACGGAGGGCAAGATCAATCAGTCCATCCAAGCTGTTGGGTAACTCCAAGGTAAAAATCTCTCTCTGGATCCGGTCAGCCAACCCATGCAGGAACATGTCCCACTGCGCTTCCTCATTCCATTTGCACTCAGCCGACAGGGTTCGGAACTTGATGGAAAAGTCCGACACAGATCTTTCACCCTGACGGAGATCAGCCAGTCTGCGTGCCGCCTCACGCCCAACTACTGCACGATCGAAAACTCTTTTCATCTCCTCAGACAGTGCTTGGAACGAGGAACAACAGGGATGGCGATTCTCCCACACCGCCGTTCCCCATAAGGCTGCCTTCCCGGACAACAGGGTGAGTACCAATGCTACCTTGGACTCTTCAGTAGCAAAAGTCTGTGgctgaagtgaaaaaaacattgagcACTTAACTAAAAACAATCTGCAAAAATTAGGCTCACCATTATATACTTCCGGTGTCGGCAGCCACGGCTCGTGCTGAGTCACGCTGATAGGAGAAGCGGGGGGAGCGGGCGGTGGGGGTGGCGCAGTGGGCGTCCCACATCTGCACCACTAGCGCGTGCACGGCTCGTCCAGTCTCGAGCATTTGCTCGTCTTGGCGATCCATTCGTGCATTGTTGCTTTCAAGCAGTTCTTGAATATTTCGAGCTTCCGCTGAATCCATATATGGTCAGATCCTTCTGTCACAAAAATCAAGAGAAGGATTCAATAGCGGTGAACGACAGTTTATTATAAGATAAACAAGAGAGAAAGTCACTGATGGCGGTGGAGCTCGTGCAGCGCGAGGATGGAAAGCAGTGCAGGGACGCAATGGGCAGCCAATCCAAGTGTAATCCTCCGAAGCAGACCGAAGCAGACCGACAAACAGAGCAACATCAGAACAGGAacagaacaggaactcaggacaacgGTGAGGATCTGACAATGAGAGTGGTGTTAGCTGGTCTTAAATAGCCCAAATAATGAGCCACAGCTGGGGCTGATCAGATCGCAATCATGAACTTAGACACACCCAACACTCAGCACatgacaaacagacacacaagatgagacaatgaatccatgaaccGTGACAAGTAGCTCCTGAGACACCGGTGACCCTGCCATTTCTCCTTTATCCTGTACCACAAGTTATGAGGTGATCTAAATCTAGAAATTGCGAATATTTCAAAATGGTTATGTTGCAAGTTATTGTTGACATTTCAACAGATTTTTAAgtgatgcaatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247610.1 lncRNA upstream 10182 13101108 ~ 13106256 (+) True LOC122327165
TU225244 lncRNA upstream 17682 13090310 ~ 13098756 (+) False LOC122327156
TU225243 lncRNA upstream 36821 13067414 ~ 13079617 (+) False LOC122327156
TU225239 lncRNA upstream 60552 13055348 ~ 13055886 (+) True G152196
TU225238 lncRNA upstream 64609 13050950 ~ 13051829 (+) True G152195
TU225246 lncRNA downstream 34 13121725 ~ 13148807 (+) False G152200
TU225249 lncRNA downstream 4143 13125834 ~ 13148807 (+) False G152200
XR_006247614.1 lncRNA downstream 51042 13172733 ~ 13175326 (+) True LOC122327169
TU225740 lncRNA downstream 56145 13177836 ~ 13180275 (+) False LOC122327212
XR_006247611.1 lncRNA downstream 73049 13194740 ~ 13197659 (+) True LOC122327167
XM_043222355.1 mRNA upstream 3705 13111482 ~ 13112733 (+) False LOC122327162
XM_043222348.1 mRNA upstream 36801 13075411 ~ 13079637 (+) True LOC122327156
XM_043222349.1 mRNA upstream 36801 13075651 ~ 13079637 (+) False LOC122327156
XM_043222426.1 mRNA upstream 41525 13063303 ~ 13074913 (+) True LOC122327210
XM_043223366.1 mRNA upstream 160130 12952151 ~ 12956308 (+) False si:dkey-246e1.3
XM_043222428.1 mRNA downstream 54736 13176427 ~ 13180221 (+) True LOC122327212
XM_043222430.1 mRNA downstream 80998 13202689 ~ 13226838 (+) True senp7b
XM_043222337.1 mRNA downstream 156680 13278371 ~ 13302756 (+) True abi3bpb
XM_043222338.1 mRNA downstream 156681 13278372 ~ 13302756 (+) False abi3bpb
XM_043222339.1 mRNA downstream 156683 13278374 ~ 13302756 (+) False abi3bpb
XR_006247603.1 other upstream 3705 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other upstream 3705 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other upstream 3705 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other upstream 3705 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other upstream 3705 13109815 ~ 13112733 (+) False LOC122327162
TU225829 other downstream 261462 13383153 ~ 13383777 (+) True G152558
TU225846 other downstream 295773 13417464 ~ 13418407 (+) True G152565
TU225879 other downstream 454047 13575738 ~ 13681947 (+) True G152584
XR_006247779.1 other downstream 845416 13967107 ~ 13967225 (+) True LOC122328230
TU226044 other downstream 919033 14040724 ~ 14042521 (+) False LOC122327219

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000176 True 5667 mRNA 0.50 1 NC_007112.7 7956030 ~ 7961696 (+)
grasscarp (Ctenopharyngodon idella) TU483148 True 589 lncRNA 0.54 1 CI01000304 4620122 ~ 4620710 (+)