G152558 (col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642)


Basic Information

Item Value
gene id G152558
gene name col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13383153 ~ 13383777 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU225829
TGCATAAGACGCAACACAGAAAGTGAAGTATACCCAGGCCTTTACCTTTAATTTTAAACCTGTGGAGTGAATTGCAagcaaatgaataattcattaagAAATTTGCTAAATAACAAACCTTTTCCTACAATAGGTTTACCCATATGCATGGGTATCTGTGGACGCTCTTTTGCATACTGTGGTAGCAAAGGCATCTCATTTCCATATGGTAAGTGCGGCTTGTCCTTTCCATGGTAATGGTGTTGGGTTATTTGTTGGGGTATCCCCTCATTGCCATGTGACAGAAGAGGTAACTGTGGCAAAGGCTGGTGCTGTTGGGGCAGTGGCTTGTGACCATAAAATGCCCCTGCATGGATATGTTGTAGCAGACAGAGGTGCTCCACCAGTACAAACAAGCAGGCAGAGAGGAGAGGCCCAGCCATGTCCTGTCAAACGGAGCACAGGAAAGAAGGTTAGTTGTCTTGGAAAAAGACAGGAAAGCTAACAGTGAacgtgtttatatatattaagtacaaaaaaaacatatccttCTTCTAGCTGATATTGATTAGTCTAGAGACGTTTCCAAACAACTAGTAGGTGTTGTTAACAAAACTGCATAGTCATGTTTTCAGTCTGTTTCCAC

Function

symbol description
col8a1b Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human COL8A1 (collagen type VIII alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(VIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225829 True 625 TUCP 0.42 1 13383153 13383777

Neighbor

gene id symbol gene type direction distance location
abi3bpb abi3bpb,LOC107566041,LOC107717674,LOC107704546,LOC107720343,LOC108436625 coding upstream 80397 13278371 ~ 13302756 (+)
senp7b LOC107717676,LOC107704544,LOC107704674,LOC107566043 coding upstream 156315 13202689 ~ 13226838 (+)
LOC122327210 NA coding upstream 308240 13063303 ~ 13074913 (+)
si:dkey-246e1.3 NA coding upstream 426845 12950609 ~ 12956308 (+)
tmem186 NA coding upstream 507819 12863320 ~ 12875334 (+)
tp53bp2b LOC107717669,LOC107704550,LOC107667887,LOC107602677 coding downstream 54410 13438187 ~ 13459632 (+)
pla2g6 pla2g6,LOC107667889,LOC107704553,LOC107602675 coding downstream 96769 13480546 ~ 13497225 (+)
LOC122327695 ncf4,LOC107704554,LOC107667893,LOC107559542 coding downstream 133351 13517128 ~ 13539026 (+)
LOC122327135 LOC107704540,LOC107717663 coding downstream 157413 13541190 ~ 13548429 (+)
arhgap19 arhgap19,LOC107679052,LOC107714154,LOC107706113,LOC107657488,LOC107588461,LOC107551371,LOC107551358 coding downstream 695173 14078950 ~ 14088700 (+)
G152557 col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107667898,LOC107571642,LOC107720377,LOC108436628 non-coding upstream 580 13379693 ~ 13382573 (+)
G152526 LOC107667894,LOC107571641,LOC107720378 non-coding upstream 27485 13354567 ~ 13355668 (+)
G152521 NA non-coding upstream 72792 13309841 ~ 13310361 (+)
G152520 LOC107695509,LOC107701922 non-coding upstream 74081 13307044 ~ 13309072 (+)
G152519 NA non-coding upstream 76234 13306427 ~ 13306919 (+)
G152569 LOC107559555,LOC107667899,LOC107704551,LOC107720376,LOC107717670 non-coding downstream 81583 13465360 ~ 13468243 (+)
G152571 LOC107717667,LOC107704552,LOC107602676 non-coding downstream 88418 13472195 ~ 13476508 (+)
G152578 NA non-coding downstream 156480 13540257 ~ 13540795 (+)
G152585 NA non-coding downstream 200008 13583785 ~ 13689603 (+)
LOC122327079 NA non-coding downstream 267724 13651501 ~ 13653037 (+)
LOC122327212 NA other upstream 202878 13176427 ~ 13180275 (+)
LOC122327162 NA other upstream 270420 13107506 ~ 13112733 (+)
LOC122327156 NA other upstream 284397 13067414 ~ 13098756 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 959231 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 1037403 12345206 ~ 12345750 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 21065 13404842 ~ 13509252 (+)
G152565 NA other downstream 33687 13417464 ~ 13418407 (+)
G152584 LOC107691164,LOC107602672,LOC107720370,LOC107559552,LOC107667897,LOC107736246,LOC107717652 other downstream 191961 13575738 ~ 13681947 (+)
LOC122327219 cunh10orf76,zgc:63733,LOC107551381,LOC107714152,LOC107588454,LOC107657489 other downstream 656944 14040721 ~ 14058580 (+)
kcnip2 kcnip2,LOC107714153,LOC107679051,LOC107551372 other downstream 687699 14071476 ~ 14078380 (+)

Expression


Co-expression Network