RNA id: TU225195


Basic Information

Item Value
RNA id TU225195
length 1356
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G152161
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12901270 ~ 12970358 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCAAGACAtaagACTTCAtttcacagacacacataaCAAATTATAGAGTCGTGTTGCATGAAAACAATGGTTGTGTTGTATTCACACGGACTGCATCATACCAAATTTAcactaaatagaaataaatacaggGAAGGAGTATAATAACGTATTAGGTTTTAAGCTCTTGAGGAATGTACAATGAATACATGTGGGTCAGTCCCTTTGAAACACCATTAACATTAAAGATCGTTTGGGGTCTTTTTGGGCCCAAATGACATTTGCTGAGATAAAAAACAAAGCTCCCTTTATCAAAATGCCATGGGACTAGCTCTACAAGTAAAACGATTGAATTGGATTTACATCTGGTTGTAGGTCAGTGTGAAAAAAAGCCACCCTCAGGATGTTTGGGGTCCACATTGAAATGAAAGGTTAcataataaaatctttttttttttttttttttttaattaatttgtcaaACAAAACCACTAAATCCACCACAATGAAGTCTGTAAAATACGCAAAAATGAAGTGGCAACCCTTCCACACATTCACAGTGTAGAGCGATtatgctctctcacacacacacacacacacacacacatacacatacatacattctaACGTCCCCGAATCACCCATAGGCATGAATGGGAgactataaaaatattgatttctgttacataatttgtcaaaaacatcagttaaaatgcggaaaaaacacacaaaaacagaaggGGTGACACCACAGCACATCCACAATggaggaaaaacacacaaagccCCCACCTCACCCCCCAACACCCCCAAACCCATAAAGCAGCAACATCCAGGAGATCTTATCATTTTTTCATAAGTGTAACATGATAAAATGAGCAGTGTTCTTTAAAATTTGATCGTTTGAAGTACTCCTGGATCCGGCTGAACATGTGCTTGTTTTTTCAGGTAATGAAGCAAAGGCAGTGCTCCGATATCATTGTAGGCTCCATCGGCACATCCTCATTTTGCAGAGTTAGATGTGTTCCTAGCTCAATATATATTGTTGACCccggaacaacattttaatccagaaCATTAGCCTTGACCATATACCTACACCTAAACCATGAGTAATCATTAAAGCCAGAAGAAAatggatagatgaatgacactgatgtacaagccaaaaaataaaaaccggttcttcaaatctgattggctaaccACAATAtcgttccagggtcaacaaagatacCGATACCAGGAACATCTCGACCTGGTACAATCAGGTTCTGCGGGTCCATCTAGTGCCTCAGTAACCCGAGCAGACAGAGAAAAGCCAACGTAGCAGTCAGTAAGATCCTGCAGGGGATCAGCATCATCCCTGTGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225156 lncRNA upstream 108044 12754346 ~ 12793226 (+) True G152142
TU225153 lncRNA upstream 153314 12747581 ~ 12747956 (+) True G152140
TU225126 lncRNA upstream 244841 12655949 ~ 12656429 (+) True G152122
TU225074 lncRNA upstream 246196 12604088 ~ 12655074 (+) True G152083
TU225118 lncRNA upstream 258775 12642057 ~ 12642495 (+) True G152115
TU225233 lncRNA downstream 46885 13017243 ~ 13028266 (+) True LOC122327168
XR_006247613.1 lncRNA downstream 46904 13017262 ~ 13028094 (+) False LOC122327168
TU225238 lncRNA downstream 80592 13050950 ~ 13051829 (+) True G152195
TU225239 lncRNA downstream 84990 13055348 ~ 13055886 (+) True G152196
TU225243 lncRNA downstream 97056 13067414 ~ 13079617 (+) False LOC122327156
XM_043223172.1 mRNA upstream 25936 12863320 ~ 12875334 (+) False tmem186
XM_043223176.1 mRNA upstream 25936 12872927 ~ 12875334 (+) False tmem186
XM_043223180.1 mRNA upstream 25936 12872927 ~ 12875334 (+) False tmem186
XM_043223175.1 mRNA upstream 25936 12872927 ~ 12875334 (+) False tmem186
XM_043223181.1 mRNA upstream 25936 12872937 ~ 12875334 (+) False tmem186
XM_043222426.1 mRNA downstream 92945 13063303 ~ 13074913 (+) True LOC122327210
XM_043222348.1 mRNA downstream 105053 13075411 ~ 13079637 (+) True LOC122327156
XM_043222349.1 mRNA downstream 105293 13075651 ~ 13079637 (+) False LOC122327156
XM_043222355.1 mRNA downstream 141124 13111482 ~ 13112733 (+) False LOC122327162
XM_043222428.1 mRNA downstream 206069 13176427 ~ 13180221 (+) True LOC122327212
TU225049 other upstream 477348 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 477348 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 555520 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 555520 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 606553 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 137148 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 139337 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 139343 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 139452 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 139457 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile