RNA id: TU225153


Basic Information

Item Value
RNA id TU225153
length 376
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G152140
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12747581 ~ 12747956 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTGACTggcatatgaacttaagtggcgttcccattcctaatccattgGGTTCAATATGACGCCAGCCCtccctttgcagctataacagcttcaactcttctgggaaggctgtccacaaggtttaggagtgtaTTTATGGGAATTTTcgaccattcttccagaagcgcATTTGTGAGTTCACACACTGATATTGgacgagaaggcctggctctcagtctccgctctaattcatcccaaaggtgttctatcaGCAAACAGAGTTcatttcactggaactaaggggccaagcccagctcctgaagaacaaccccacaccataatcccgcCTCCATCAAACTTTACACCaggcacaatgcagtcagacaagtactGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225126 lncRNA upstream 91152 12655949 ~ 12656429 (+) True G152122
TU225074 lncRNA upstream 92507 12604088 ~ 12655074 (+) True G152083
TU225118 lncRNA upstream 105086 12642057 ~ 12642495 (+) True G152115
TU225101 lncRNA upstream 118281 12589913 ~ 12629300 (+) True G152101
TU225089 lncRNA upstream 126905 12580839 ~ 12620676 (+) True G152092
TU225156 lncRNA downstream 6390 12754346 ~ 12793226 (+) True G152142
TU225195 lncRNA downstream 153314 12901270 ~ 12970358 (+) False G152161
TU225211 lncRNA downstream 199946 12947902 ~ 12956791 (+) True G152173
TU225193 lncRNA downstream 218367 12966323 ~ 12970358 (+) True G152161
TU225233 lncRNA downstream 269287 13017243 ~ 13028266 (+) True LOC122327168
XM_043223935.1 mRNA upstream 14725 12722862 ~ 12732856 (+) True capn2l
XM_043223524.1 mRNA upstream 25249 12713295 ~ 12722332 (+) True LOC122327868
XM_043223525.1 mRNA upstream 48545 12688924 ~ 12699036 (+) True LOC122327869
XM_043223532.1 mRNA upstream 88866 12658064 ~ 12658715 (+) True mrps28
XM_043222259.1 mRNA upstream 97507 12645181 ~ 12650074 (+) True LOC122327087
XM_043223530.1 mRNA downstream 24595 12772551 ~ 12783452 (+) True LOC122327873
XM_043223132.1 mRNA downstream 37869 12785825 ~ 12812611 (+) True adcy9
XM_043223131.1 mRNA downstream 65205 12813161 ~ 12852216 (+) True crebbpa
XM_043223166.1 mRNA downstream 104485 12852441 ~ 12862677 (+) True slx4
XM_043223172.1 mRNA downstream 115364 12863320 ~ 12875334 (+) False tmem186
TU225049 other upstream 323659 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 323659 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 401831 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 401831 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 452864 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 359550 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 361739 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 361745 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 361854 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 361859 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU119436 True 390 lncRNA 0.43 2 NC_048566.1 2336048 ~ 2336506 (+)
eurasian perch (Perca fluviatilis) TU119436 True 500 lncRNA 0.56 2 NC_053119.1 28888004 ~ 28889684 (-)
striped catfish (Pangasianodon hypophthalmus) TU119436 True 678 lncRNA 0.46 1 NC_047600.1 17717351 ~ 17718028 (-)
bowfin (Amia calva) TU119436 True 2802 lncRNA 0.39 1 CM030132.1 2936294 ~ 2939095 (-)