RNA id: XM_043223172.1


Basic Information

Item Value
RNA id XM_043223172.1
length 763
RNA type mRNA
GC content 0.52
exon number 2
gene id tmem186
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12863320 ~ 12875334 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGCTTTATCCTATTGTGCTCCAGAAACACATTAATACatgtttggaatggcatgaggATGACGTCGTCAAGATTAATCCACATCTCCCGTCTTCGTCTCTACGGGTGCCGTCGCGCAGGACCGATGGTAAACTTCACAGTCGCGCGCCACGCACCGATCCAACCTGCATGCTTCTGCTCGGACCTTGCCTCGAGAAAATACAGTCCGATCTACACCTTTCCGGCTATCAAGAGCCTCCGGGCGCTTTCTAGACTCAAGCTGATGCAGACGGGCATCACTGTCATCTTACTGCCCGCGGTGTATGTCCTGTACCTGCAGGGCCAGGCCTCAGTGACCCTGCTGAGTTACTCCACAGGCATCGCCGCGTTTGCCGGCCTCATGCTCTACTCCATAAGCAGCTACGTGAGACGAGTGGTGGGCATGATGTATCTGGACTCAACGCAGACCGTCTTAAAGGTGTCTCACCTGACCTTCTGGGGTTTCAGGCGGGACGTGTACCTGCCCGTGTCGGATGTCATGACTCTGGGAGATTCGGGGGATAAAAAAGGAGAGCCGATCCTGCGTTTAAAGCGCTATAGCTGTTCTGATACAATGTACTTCTCTACCAGACTGGGACGAGTGGTGGACAAAAATGCGTTCGAGAAAGTATTCGGGAGTTTGTCGTGAGGTCGCGACGCCTCTGTTCCTTTTGTTTTTTCGCGTCATGTGACATTAGACGCTGTTTTGGAATTTAAGTGACGAATAAAGATGTtatgttaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225156 lncRNA upstream 70094 12754346 ~ 12793226 (+) True G152142
TU225153 lncRNA upstream 115364 12747581 ~ 12747956 (+) True G152140
TU225126 lncRNA upstream 206891 12655949 ~ 12656429 (+) True G152122
TU225074 lncRNA upstream 208246 12604088 ~ 12655074 (+) True G152083
TU225195 lncRNA downstream 25936 12901270 ~ 12970358 (+) False G152161
TU225211 lncRNA downstream 72568 12947902 ~ 12956791 (+) True G152173
TU225193 lncRNA downstream 90989 12966323 ~ 12970358 (+) True G152161
TU225233 lncRNA downstream 141909 13017243 ~ 13028266 (+) True LOC122327168
XR_006247613.1 lncRNA downstream 141928 13017262 ~ 13028094 (+) False LOC122327168
XM_043223166.1 mRNA upstream 643 12852441 ~ 12862677 (+) True slx4
XM_043223131.1 mRNA upstream 11104 12813161 ~ 12852216 (+) True crebbpa
XM_043223132.1 mRNA upstream 50709 12785825 ~ 12812611 (+) True adcy9
XM_043223530.1 mRNA upstream 79868 12772551 ~ 12783452 (+) True LOC122327873
XM_043223935.1 mRNA upstream 130464 12722862 ~ 12732856 (+) True capn2l
XM_043223368.1 mRNA downstream 75275 12950609 ~ 12956308 (+) False si:dkey-246e1.3
XM_043223364.1 mRNA downstream 76814 12952148 ~ 12956308 (+) True si:dkey-246e1.3
XM_043223365.1 mRNA downstream 76814 12952148 ~ 12956308 (+) False si:dkey-246e1.3
XM_043223366.1 mRNA downstream 76817 12952151 ~ 12956308 (+) False si:dkey-246e1.3
XM_043223367.1 mRNA downstream 78462 12953796 ~ 12956308 (+) False si:dkey-246e1.3
TU225049 other upstream 439398 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 439398 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 517570 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 517570 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 568603 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 232172 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 234361 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 234367 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 234476 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 234481 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile