RNA id: TU225156



Basic Information


Item Value
RNA id TU225156
length 419
lncRNA type read_through
GC content 0.50
exon number 2
gene id G152142
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12754346 ~ 12793226 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAATATCCTGTGATGTAGTTCTCTCTGGGTGTGTTGGGTGACAATAAAAGGCTCATCAAGTTCTCCGGGTTTATGAACATGTCAGAATCAACCTTCATAGCATAAGTTGCTTGAGGGCAGCGAGTGGCCAACCAGTCCATGATCACCATGGTCTTTATGGTCAGGTTGAAGTAGGAGTCCACAAAGTCGCTCTGCAGTAGATCTCTGTGTTGTCGACTCTCTTCCTTCAGCTGCTGTTGAGCTTCAGCTCCTCCAGACAAACCCACCAAGAACAGAGTCAGCACTGCTTTTCCCTGCACTGAGCTCTCGTTCCCCCATGTGCTCCGGATGGCGTTACGAGCAGCTACGTCATGAGGTGCCACGGGGACCATAAAGACCAGGAACGGATCCCACTGACTACATTTATCGGGTTCGTCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU225153 lncRNA upstream 6390 12747581 ~ 12747956 (+) True G152140
TU225126 lncRNA upstream 97917 12655949 ~ 12656429 (+) True G152122
TU225074 lncRNA upstream 99272 12604088 ~ 12655074 (+) True G152083
TU225118 lncRNA upstream 111851 12642057 ~ 12642495 (+) True G152115
TU225101 lncRNA upstream 125046 12589913 ~ 12629300 (+) True G152101
TU225195 lncRNA downstream 108044 12901270 ~ 12970358 (+) False G152161
TU225211 lncRNA downstream 154676 12947902 ~ 12956791 (+) True G152173
TU225193 lncRNA downstream 173097 12966323 ~ 12970358 (+) True G152161
TU225233 lncRNA downstream 224017 13017243 ~ 13028266 (+) True LOC122327168
XR_006247613.1 lncRNA downstream 224036 13017262 ~ 13028094 (+) False LOC122327168
XM_043223935.1 mRNA upstream 21490 12722862 ~ 12732856 (+) True capn2l
XM_043223524.1 mRNA upstream 32014 12713295 ~ 12722332 (+) True LOC122327868
XM_043223525.1 mRNA upstream 55310 12688924 ~ 12699036 (+) True LOC122327869
XM_043223532.1 mRNA upstream 95631 12658064 ~ 12658715 (+) True mrps28
XM_043222259.1 mRNA upstream 104272 12645181 ~ 12650074 (+) True LOC122327087
XM_043223131.1 mRNA downstream 19935 12813161 ~ 12852216 (+) True crebbpa
XM_043223166.1 mRNA downstream 59215 12852441 ~ 12862677 (+) True slx4
XM_043223172.1 mRNA downstream 70094 12863320 ~ 12875334 (+) False tmem186
XM_043223176.1 mRNA downstream 79701 12872927 ~ 12875334 (+) False tmem186
XM_043223180.1 mRNA downstream 79701 12872927 ~ 12875334 (+) False tmem186
TU225049 other upstream 330424 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 330424 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 408596 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 408596 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 459629 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 314280 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 316469 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 316475 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 316584 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 316589 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile