capn2l (capn2l,LOC107722669,LOC107755345,LOC107659324,LOC107655374,LOC107565171)


Basic Information

Item Value
gene id capn2l
gene name capn2l,LOC107722669,LOC107755345,LOC107659324,LOC107655374,LOC107565171
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12722862 ~ 12732856 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223935.1
GGGCGCGCTTTCACTGTTGTTACGGAGAGGTCCAGAGATGTCAGGAATCGCAGCGAAGCTCCAGCAGAACCGGGCGCGGGCAGCGGGCATCGGAACCAACGCTCAAGCCGTGAAATTCCTCAACCAGGACTACGAGGCGCTCAAGCGCGAGTGTCTGCAGGGCGGACGCCTGTTTCAGGATGACACGTTCGAAGCAAGCGCATCCGCGCTCGGGTTCAAAGAACTGGGACCAAACTCCTCTAAAGTGCGAGGGGTTGAGTGGCTGAGACCAAAGCAACTGACATCCAACCCAATGTTTATCAGCGGAGGAGCGTCCAGAACTGACATCTGCCAGGGGGCTTTGGGTGACTGTTGGCTTCTAGCTGCCATCGCGTCTCTTACCCTCAACCAGGACGTGTTCGCTCGTGTGGTCCCGTCTGGACAGACTTTTGACGGAGACTACGCTGGAATATTTCATTTCCAGTTCTGGCAGTTTGGTGAATGGGTGGACGTGGTCATTGACGACCGTCTTCCTACAAGAAACAAAGAGCTGCTGTTCGTCCACTCCGCCGAGGGCTGCGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCAAAGGTGAATGGCTGCTACGAAGCTCTGTCTGGTGGCTCCACCACCGAGGGCTTTGAGGACTTCACTGGAGGCATCGCTGAGGTCCACGAACTAGCAAAAGCAGGTCCAAACCTCTTCAAAATCATCCAGAAGGCTTTGAGCTGGGGCTCGCTGCTGGGCTGCTCCATAGATATCACAGACTCAGCTGATTCAGAGGCCATTACTAGTCAGAAACTGGTGAAAGGACATGCCTACTCGGTTACAGGAGCCGAAGAGGTGGAATACAGGGGCAACTTAACCAAACTGATCCGCATCAGGAACCCCTGGGGGCAGGTGGAGTGGACCGGAGCCTGGAGCGATGGGTCATCAGAATGGAGGCAAATCAGTGACAGCGAACGTGAGAAACTGAGCTGCAAAGCAGAAGATGGAGAGTTCTGGATGTCATTCTCTGATTTCCTGCGTTATTACTCGCGGGTGGAGATCTGTAATCTGACCCCTGATGCTCTGACAGATGACAGCGTTAATAAGTGGGCTCTGTCCAAGTTTGATGGGAACTGGAGGAGAGGATCAACTGCTGGAGGATGCAGGAATTACCCAAACTCGTTCTGGATGAACCCTCAGTTTTTGATCAAGCTGGAGGAGCAGGACGACGACCCGACCGATAACGAAGTAGGCTGCAGCTTCGTTGTGGGTCTGATCCAGAAGAACCGCCGCAAAATGAGGAAAGCCGGAGAGGACATGCACACCATCGGCTTCGCCATCTACGAGGTTCCTCACGAGTTTGTCGGGCAGAGGAACGTCCACCTGGACCGTAACTTCTTCGTGAGACATGCTTCAGCGGCCCGCTCTGAGACCTTCATCAACCTGCGCGAGGTTTGCTCTCGCTTCTGTCTGCCTCCCGGAGAGTATCTCATCGTACCCTCCACCTTCGAGCCCAACAAGGACGGAGACTTCTGCGTTCGCATCTTCTCTGAGAAACAGGCAGACTTCCAaGAGCTTGATGACTCTGTCGCCTGCAACGTTCCTGAGATTAATGTGAAGGAGGGTGATATTGACAGCCGGTTCAAGAATCTGTTTGGACAGCTTGCTGGGGCAGATGCTGAAATCTCAGCATTTGAGCTGCAAAATATCCTGAACAAAGTGATATCTAAACgtaaaGACATTAAAAGTGATGGATTTAGTTTGGACACTTGCCGCAACATGGTGAACTTACTGGATAAAGACGGCAGTGGAAAACTGGGCATCGTCGAATTTAAGATTCTCTGGACTAAGATTGAGCTGTACCTGGACATCTTCTGTAAAGCCGACAAGGACAAGTCCGGCACAATGAGCTCCACGGAGATGAGGGAAGCCATAGGGAAAGCAGGCTTCTCTTTGAACAAGGCCCTCCACCAGATCATGGTCGCGCGCTACAGCGACGACGAGTTCACCATCGACTTTGACAACTTTGTGGGCTGCATTGTGCGCCTTGAGAGCATGTTCAAAACGTTTAAAATGCTGGACAAGGATAAGAGCGGCACGATAGAGCTGAGcttttttgagTGGCTGAATTTTTCCATGCTTTGAGGAAAATGGGCGGCAGATTCTGGACGGCTGGGTGGAGATCTGAAGTTTCTTTCACGCTGCACAGACACTGACATCCCTGGAATATCTCACACGTGTCATAAAAACAATAGTTCATGTTCTCCAGATTGAGACCTCCGTGAAAAACGGATGGATTTCAAGCTCCTGCGCTGCGTAATAGAATTCATATTATGGCGGTTCACTGAAGGGTATTTACTAGTACAGATGACAaacatatatgaaaaaatatgtctctatttaaaaaaaaaaatgtaatcataagcaaaagtaaataaatcttGTGACTTTTAAGAACAGTGACCTTGAGCATCATGTCTTGCTGTAAATACAACTAAGTTTAACTAACTtataagcaaatatttttgtggaagaaACACTATTTAAGCAAAAACCACCAATTTTACTTAAATCGTTCATGTGCAATTGTGTGTGTTATGACAACAAACAAACTCGTGTTTGCAGCGACGCATTTATTAACGGAGgttaaaagcataaatgtgaACTGATGGCACAaatcatgtaataaaaaatatcacttGATTTAAAATACTGGGTAaa

Function

symbol description
capn2l Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within regulation of cytoskeleton organization. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in ectoderm; epidermis; lateral line ganglion; pectoral fin; and pharynx. Orthologous to human CAPN2 (calpain 2).

NR:

description
PREDICTED: calpain-2 catalytic subunit-like isoform X3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223935.1 True 2716 mRNA 0.49 21 12722862 12732856

Neighbor

gene id symbol gene type direction distance location
LOC122327868 capn8,LOC107755343,LOC107566058,LOC107655376,LOC107655329,LOC107571859 coding upstream 530 12713295 ~ 12722332 (+)
LOC122327869 LOC107755343,LOC107655376 coding upstream 23826 12688924 ~ 12699036 (+)
mrps28 LOC107659331 coding upstream 64147 12658064 ~ 12658715 (+)
LOC122327087 LOC107659305,LOC107722666,LOC107755331,LOC107655385,LOC107569131,LOC101886628 coding upstream 72788 12645181 ~ 12650074 (+)
dnaja3b dnaja3b,LOC107716437,LOC107659308,LOC107655350,LOC107715716,LOC554962,LOC107569120 coding upstream 180178 12536097 ~ 12542684 (+)
LOC122327873 LOC107755346,LOC107566053,LOC107659322,LOC107742088 coding downstream 39695 12772551 ~ 12783452 (+)
adcy9 adcy9,LOC107755348,LOC107566672,LOC107659321,LOC107655369,LOC107742090,LOC107566051 coding downstream 52969 12785825 ~ 12812611 (+)
crebbpa LOC107742089,LOC107655368,LOC107755349,LOC107566670,LOC107566050 coding downstream 80305 12813161 ~ 12852216 (+)
slx4 LOC107755350,LOC107659319,LOC107566668 coding downstream 119585 12852441 ~ 12862677 (+)
tmem186 NA coding downstream 130464 12863320 ~ 12875334 (+)
G152122 NA non-coding upstream 66433 12655949 ~ 12656429 (+)
G152083 NA non-coding upstream 67788 12604088 ~ 12655074 (+)
G152115 NA non-coding upstream 80367 12642057 ~ 12642495 (+)
G152101 NA non-coding upstream 93562 12589913 ~ 12629300 (+)
G152092 NA non-coding upstream 102186 12580839 ~ 12620676 (+)
G152140 NA non-coding downstream 14725 12747581 ~ 12747956 (+)
G152142 LOC107569129,LOC107742087,LOC107655331,LOC107755334 non-coding downstream 21490 12754346 ~ 12793226 (+)
G152161 NA non-coding downstream 168414 12901270 ~ 12970358 (+)
G152173 NA non-coding downstream 215046 12947902 ~ 12956791 (+)
LOC122327168 NA non-coding downstream 284387 13017243 ~ 13028266 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 298940 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 377112 12345206 ~ 12345750 (+)
G152032 NA other upstream 428145 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 446254 12010469 ~ 12276608 (+)
LOC122327156 NA other downstream 334558 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 374650 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 443571 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 650297 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 671986 13404842 ~ 13509252 (+)

Expression


Co-expression Network