mrps28 (LOC107659331)


Basic Information

Item Value
gene id mrps28
gene name LOC107659331
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12658064 ~ 12658715 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223532.1
ATGGCGTCGCTCTGCAAGGTGATGCACAGCGTGTGCTCCAGATCATCTCTACTACCCAAACGCTGCGTTTTTACCACCCTCGGATCGTTATACAGCTCAGATGCGAGCGGAGGAGACGATAAATCAGCCGGGAGGGCGAAGAGCGGGTTCGCCGCAGCGTATGAGCAGCATTCGGGCCTGCGACAGAGCGGTCAGCGGAGCTCCGTGGACGAGACCTCCTTCGCGTCGCTGCTGCGTCGCTCCGCGTTCACGCAGATGGGTCCGGCCAAAGACAAGATCGTGGTTGGCAGAATCTTTCACATCGTCAACGACGACCTGTATATCGATTTCGGCGGGAAGTTCCACTGCGTGTGCAAGAGACCCTCCGCGGACGGAGAGAAGTACCAGCGCGGCAGCAGGGTGAGGCTGAGGCTGGAGGATATGGAGATGACCTCGCGGTTCCTCGGAGCGACCGTCGATACGACGCTGCTGGAGGCGGACGCCGTTCTGCTGGGACTCGTAGAGAGCAAGGCGACGGAGTAGCAGCCGTTGAGAACTCGGACTGAAGTGTATGACTCTGTACTGcgtatagaaatataaaatgtaatatcccAGGATTCTGATTCCGgtctatctatatgtatatctataaacacgcattttaaaaatgtta

Function

NR:

description
PREDICTED: 28S ribosomal protein S28, mitochondrial

GO: NA

KEGG:

id description
K17407 MRPS28; small subunit ribosomal protein S28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223532.1 True 652 mRNA 0.55 1 12658064 12658715

Neighbor

gene id symbol gene type direction distance location
LOC122327087 LOC107659305,LOC107722666,LOC107755331,LOC107655385,LOC107569131,LOC101886628 coding upstream 7990 12645181 ~ 12650074 (+)
dnaja3b dnaja3b,LOC107716437,LOC107659308,LOC107655350,LOC107715716,LOC554962,LOC107569120 coding upstream 115380 12536097 ~ 12542684 (+)
vasna vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741 coding upstream 154087 12485205 ~ 12503977 (+)
LOC122328225 LOC107716435,LOC107659297,LOC107569129,LOC107715742 coding upstream 179129 12473253 ~ 12478935 (+)
LOC122327840 NA coding upstream 186729 12469118 ~ 12471335 (+)
LOC122327869 LOC107755343,LOC107655376 coding downstream 30209 12688924 ~ 12699036 (+)
LOC122327868 capn8,LOC107755343,LOC107566058,LOC107655376,LOC107655329,LOC107571859 coding downstream 54580 12713295 ~ 12722332 (+)
capn2l capn2l,LOC107722669,LOC107755345,LOC107659324,LOC107655374,LOC107565171 coding downstream 64147 12722862 ~ 12732856 (+)
LOC122327873 LOC107755346,LOC107566053,LOC107659322,LOC107742088 coding downstream 113836 12772551 ~ 12783452 (+)
adcy9 adcy9,LOC107755348,LOC107566672,LOC107659321,LOC107655369,LOC107742090,LOC107566051 coding downstream 127110 12785825 ~ 12812611 (+)
G152122 NA non-coding upstream 1635 12655949 ~ 12656429 (+)
G152083 NA non-coding upstream 2990 12604088 ~ 12655074 (+)
G152115 NA non-coding upstream 15569 12642057 ~ 12642495 (+)
G152101 NA non-coding upstream 28764 12589913 ~ 12629300 (+)
G152092 NA non-coding upstream 37388 12580839 ~ 12620676 (+)
G152140 NA non-coding downstream 88866 12747581 ~ 12747956 (+)
G152142 LOC107569129,LOC107742087,LOC107655331,LOC107755334 non-coding downstream 95631 12754346 ~ 12793226 (+)
G152161 NA non-coding downstream 242555 12901270 ~ 12970358 (+)
G152173 NA non-coding downstream 289187 12947902 ~ 12956791 (+)
LOC122327168 NA non-coding downstream 358528 13017243 ~ 13028266 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 234142 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 312314 12345206 ~ 12345750 (+)
G152032 NA other upstream 363347 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 381456 12010469 ~ 12276608 (+)
LOC122327156 NA other downstream 408699 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 448791 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 517712 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 724438 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 746127 13404842 ~ 13509252 (+)

Expression


Co-expression Network