LOC122327869 (LOC107755343,LOC107655376)


Basic Information

Item Value
gene id LOC122327869
gene name LOC107755343,LOC107655376
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12688924 ~ 12699036 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223525.1
cactcacacactacaCAAGCTTCAGAGGAACTTGAGTACGACTAGCAGGCAGCATGTCTAATATCGCCAAAACTATTTCTAGGAGGCAGGGTAGAGGAGAAGGATTGGGAACAAACAAGAAGGCAATTCCCTTCAACAAGCAGGACTACCAGACCCTGAAGCAGGAATGCCTGGCGAAAAAAACCCTGTTCTGTGACCCGACCTTCCCTGCTGAATCCAATTCTCTGGGATACAATGAACTCGGACCGCAGTCCTCTCAGACCAGAGGAGTCCAGTGGAAGAGACCTAAGGAGATCTGCTCAAACCCTCAGTTCATTGTGGACGGAGCCACACGGACGGACATCTGCCAAGGAGCTTTAGGTGACTGTTGGTTGATGGCGGCTATTGCATCTTTGACTCTGGAAAATGAGTTTTTGGAACGTGTAGTTTCTCCTGGACAGAGTTTTACAGAGAACTATGCCGGCATCTTTCACTTTCAGCTCTGGCAATATGGTGAATGGGTGGATGTTGTCATTGATGACCGACTGCCCACCAGAGATGGAAGACTGCTGTTTGTTCGTTCAGCTAATGGTTCGGAGTTCTGGAGTGCACTGTTGGAAAAGGCCTATGCAAAGGTAAATGGCTCATATGAAGCTCTGTCTGGAGGCCTGACCCTTGAGGGTTTTGAAGATTTCACTGGAGGCATCTCTGAGAGCTATGACCTGAGCAAACCTCCTCCACACCTGTTTAAACTCATACAGAAAGCACTGACGCTTGGATCATTAATGGGTTGCTACATCGTTGCCAGTTCGCAGGAGACAGAAGCAAAGACAAGTCTGAAGCTGGTGAAGCTTCATGCCTACTCAGTCACCAGCGCAAAGGAGGTTCATTCCAATGGTCGTCTGGTTCAGTTGGTGCGTATCAGGAACCCTTGGGGACGGGTGGAGTGGACGGGCCCTTGGAGTGACGATTCCAATGAGTGGACAACCGTCCAACCGGAGGAGAGAGCTAAACTGGTTTATTCTGCTGATGATGGAGAGTTCTGGATGGCATATTCAGACTACATACAGCATTTCTCGAAGTTGGAAATTTGCAATCAGACTCCAGATGCCCTTTCAAGTGACACTTTAAGCCACTGGAGCTTCACCCAGTTTGAAGGTGACTGGAAGGTGGGATCCACCGCAGGGGGCTGCATAAAGAACACAGTTGCATTCTGCTCTAACCCTCAGTTTGTGATCAAGCTggaggaagaagatgatgatCCTCATGATGGAGAGATCGGCTGCACGATCCTAGTGGGTCTGATGCAGAAAGATTTTCGTAAAAACAGGCGTTTTAGACAAAACCCAAACACCATCGGTTTCTCTATCTATAAGgttcCAAATGAGTTCAAGGGTCGCAGTAACATTCATCTCGGTCCTGACGTATTGCAGCATCAACGGTCCATTGCAAGTTCCAGCTACTCCGGCCACAGAGAGGTGAGCGAGCGCTTCAAACTGCCTCCGGGTGAATACGTCATTATCCCCTACACTTTTGAGGCAAATCGCAGCGGAAGCTTTGTACTGCGTGTGTTCACAGAGAAAGAGGCTGCTGCCAGCCTCGTGGACACGGATATCAGTGCAAATGTGAAAAAGGAATACATTTCTGAGAATGATGTGGACCcacattttaaacagtttttcaatCAGGTTGCTGGAAATGACTCAGAGGTGTCTGTGTTTGAACTGAAGCAGGTCCTAGACAGTGTTATCTCGAAACGAACCGATGTGAAGACGGATGGATTTAGTATGGAAACCTGTCGCCACATTATCAGTCTGCTAGATAGAGATGGCAACGGCAAACTCGGTCTTGTGGAGTTTCAAATACTATGGACAAAGATCCAGAAATATTTgGAGGCTTTTAAGAAGCATGATACAGACAACTCAGGCACTATGAGTTCCTATGAGATGAGAGATGCCGTGAAAGAAGCAGGGTTCCAGCTGAACAACGAGGTTCTTCAGGTGATCATCTCACATTACGCCAATCAGCAGTACTCCATTGACTTCGATTCCTTCGTTGGCTGCCTGATTCACTTGGAAATGCTCTTCAaaatatttaaaacattgaatAAGAAGGACACGGGGAAAATTGAGCTGGATATCCTGCAGTGGCTCTGCTTGGCACTCAGTTGAAAATCCACTCACCATAACTGCATCAGAAGTCAAATCTTCGAAGAAGATGCAGCAGACCTGAAATACTCAAGAGTAAAAACAACTCAAGGCGGGTATTATCTAAACTCGGAATggcttaaaacattttttggtgcTTATCTGCTGAAAATCAGTAaactaaatatctaaaatatattacactATTTCAGTGAAAACTAACATATAATCATGAATATTGTACTGAATATCATGGTATTTACATagtatatgtattaaatgtcCATTGCAAGTCTACTGAACCCAAGTGTGCAGAACCCAAAGCATTAATTCAGTTACAGacaatcatctttttttatggTGAGGTACTTTAAAGGTGCATACTGCCACCTACTGCATTGGAGtagatcattttttttgtatttttacaacCGCTACTTACTTTTTCAAAACTCTTCTCACAGCAAGAACGACATCAGTCTATGTGGGCTCAACTGCGAATCATTTATCATTGCTTTGCACAAAATGCATGTCAAACTTTCTCACTTCTGACACACACCACCAAAACCTTATTTACTACACAAGCGCATGTCTACATAATGCATTCATAACTGTTAAAAGTTCAAAACCTGGCACAGTACAAATTCAATAAGACAGAAATTTGCAACATTTCGACAGTAATGTCATactgaaaagcattttgaatgTAAAACTGAAGCAGTTGGGTTCACTATGGGTTAGTCTTTTACTGTAATGTAAACATGGtaatttaagcacattttaaatgtgaaataaactgTGTAAATGTATGCTTACGAttgtttaaaaactgaattaattatttaattaattcatgacTCATCTAAATTCTACTAATATGTCCAAACAATAAGTAATGCTTTAATAACCTACATTTTCTAAAACACCTTTAATATCTTAATTCCTTCCTAATTCGAtgatacttttctttttttcctttcttataCCTATCAATAttcagtattattaaatattttgtgtgctAACTAAAGCATCTAAAGATCCTCAAATGCAATActctttcatatatttttttttcttttatattcaatttatcattttatcatttatcaatttatcatacatacaaaattattatacaatcatttaacagtttatttacccATTTAA

Function

NR:

description
PREDICTED: calpain-2 catalytic subunit-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223525.1 True 3296 mRNA 0.41 21 12688924 12699036

Neighbor

gene id symbol gene type direction distance location
mrps28 LOC107659331 coding upstream 30209 12658064 ~ 12658715 (+)
LOC122327087 LOC107659305,LOC107722666,LOC107755331,LOC107655385,LOC107569131,LOC101886628 coding upstream 38850 12645181 ~ 12650074 (+)
dnaja3b dnaja3b,LOC107716437,LOC107659308,LOC107655350,LOC107715716,LOC554962,LOC107569120 coding upstream 146240 12536097 ~ 12542684 (+)
vasna vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741 coding upstream 184947 12485205 ~ 12503977 (+)
LOC122328225 LOC107716435,LOC107659297,LOC107569129,LOC107715742 coding upstream 209989 12473253 ~ 12478935 (+)
LOC122327868 capn8,LOC107755343,LOC107566058,LOC107655376,LOC107655329,LOC107571859 coding downstream 14259 12713295 ~ 12722332 (+)
capn2l capn2l,LOC107722669,LOC107755345,LOC107659324,LOC107655374,LOC107565171 coding downstream 23826 12722862 ~ 12732856 (+)
LOC122327873 LOC107755346,LOC107566053,LOC107659322,LOC107742088 coding downstream 73515 12772551 ~ 12783452 (+)
adcy9 adcy9,LOC107755348,LOC107566672,LOC107659321,LOC107655369,LOC107742090,LOC107566051 coding downstream 86789 12785825 ~ 12812611 (+)
crebbpa LOC107742089,LOC107655368,LOC107755349,LOC107566670,LOC107566050 coding downstream 114125 12813161 ~ 12852216 (+)
G152122 NA non-coding upstream 32495 12655949 ~ 12656429 (+)
G152083 NA non-coding upstream 33850 12604088 ~ 12655074 (+)
G152115 NA non-coding upstream 46429 12642057 ~ 12642495 (+)
G152101 NA non-coding upstream 59624 12589913 ~ 12629300 (+)
G152092 NA non-coding upstream 68248 12580839 ~ 12620676 (+)
G152140 NA non-coding downstream 48545 12747581 ~ 12747956 (+)
G152142 LOC107569129,LOC107742087,LOC107655331,LOC107755334 non-coding downstream 55310 12754346 ~ 12793226 (+)
G152161 NA non-coding downstream 202234 12901270 ~ 12970358 (+)
G152173 NA non-coding downstream 248866 12947902 ~ 12956791 (+)
LOC122327168 NA non-coding downstream 318207 13017243 ~ 13028266 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 265002 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 343174 12345206 ~ 12345750 (+)
G152032 NA other upstream 394207 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 412316 12010469 ~ 12276608 (+)
LOC122327156 NA other downstream 368378 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 408470 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 477391 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 684117 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 705806 13404842 ~ 13509252 (+)

Expression


Co-expression Network