LOC122327054 (LOC107715704)


Basic Information

Item Value
gene id LOC122327054
gene name LOC107715704
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12414582 ~ 12421657 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222228.1
AGCCCCTCCCCCTGTTAAATGATTTAGAGAAGcaacgaaaaaaaaacacaggtaGTGCAGGACAAAACAAAACGTTTGACTTATCCGTCACCGATTCCTTCGGGCAATGGCCGTTGAATGCTTGCAGAAGAGGTGCTGTTTGGCTAAAGGAAGAGGTTTTATGGGTCGCTTTAAACCAGGATTTGCGCTGGCCGCattggcatgttttttttggtgcattattgcttttatttataacttCTCTCTCGTGCCAGTCTCTCACCCTCGAACCTGGTTTAACCAAACTAAATTGTATAATTTGATGTCTggcaaaaaaagacatttaactAATAAACAAACTATTGAAACATCTTCCACCGAGAAAAAACCCTCTGCATCCATTATAACAGAAGCCATTTCAACTCACCGGTATGTAGCACATCCAAGCAACTATCATTTCACTCTGGACGAACCTGATAAATGTAAGCAGGATCCGTTCCTGGTCTTGATGGTCCCCGTGGCACCTCATGACGTAGCTGCTCGTGACGCCATCCGGAGCACATGGGGGAACGAGAGCTCAGTGCAGGGAAAAGCAGTGCTGACTCTGTTCTTGGTGGGTTTGTCTGGAGGAGCTGAAGCTCAACAGCAGCTGGAGGAAGAGAGTCGACAACACAGAGATCTACTGCAGAGCGACTTTGTGGACTCCTACTTCAACCTGACCATAAAGACCATGGTGATCATGGACTGGTTGGCGACTCGCTGCCCTCAAGCAACTTACGCTATGAAGGTTGATTCAGACATGTACATAAACCCGGAGAACCTGATGAGCCTTTTATTGTCACCCAACACACCCAGAGAGAACTACATCACAGGATATTTGATGCTGGACCAGCCTGTCGTCAGAGACAAAAGCTCGAAATGGTACGTTCCAGAGGAGCTGTACCCGGAATCGAGATACCCCACGTATGTGCTTGGAATGGGATATGTTTTCTCCAAtgatattccttttaaaatagtGAGGGCTTCAAAATCCATTAAGCCCTTTAACATAGAAGACGCGTATGTGGGCGCTTGTCTGAAATGGATGGGTTTAAATCCCTCTGATGCTCCGGATCCTTCTCAGTTTCAGACCTACGTGAAGGACTCTAAAAGTACGGACCTTTCCAAGATCATTACAGCAATCGCGGGGTCATCGGAGAAGGTAATCGAGTTCTGGCAAAATGTGAATAGAcgcaaatgaacagaaaaatgaattgaatttcaaatgaatttatAGTATAGACAATAGTACGACTTTGTCCATAtgacaaaaaatgaacattatataATACGTTATTATTGGTCAATGACATTTGAAAGTGTCCACAAAGAACCAATTGCCTataaatgtgacaaaatgaacacatttattgtatatatttaaatatatttatattttagtgaatataataaaaataaacagtataagGTAAGGTAAATTATcgtttgcacattttttttttctgcatcaactgcatgaaaatactttttttttaaattattattgtatcaGTATGTGTTGGTAGCctcataaagtaaataaaattcaaattttctgcttaaatgttatcatttattattaaatgtatgacTTTCTAAAAAGCGTCTCTTCTGTGCAAGACGCGAGTGCAACGCTGATAGACGATAAATATGCGTAAGCAGGTCTGCGTAGTAAATTATTAGTTATGAAAATATGcgatatgaaatattttagcGCGGTGGGGCAGCTCCATATATACGGTTATGAGCTAAAATGGATCAgccatttgaacaaatcaatggatgaataaatatataaatttaataataaataaatttagcgCCAGCTGCTGGCAGTTTCAAGAACTTATATAGAgtattatttaatctaaaaaataaagaaataaagagagagagagcactgtATGTAATTATTCTTTCTAAAGCTTAATACCTTCTCATTTAACTGGGTAATGAACACATCATTTAATCgtgtaattaatgacattaaaaaccGCTATCAACTGACATATAtagtaaatacatattaatatctaGAACTACGTGAGCCTCAGATTTGCACAGCACACATAATACAGCCGTTCcttttctctcaacatggcaacacaagAACTGTCAGTCAAAACTTAGTATAACTAGCATTACTTATTTGAACAAGTGATTCAGACGTTCGCTTCTAAATTACAAATCAATGCCTTcactaattaatttaaaaaaagttacataattTGTGCTACTTGTACTATTGGTACTATTATGTATGGTTAGGCTGTTATAAAAGTGTATGTATTATAGAGTTGTTTGTGGTGGGGATAAACATGCAAAATGCGTATTTATCGCCCATTTCTACTTTGatacaaacatattattttatagaaattttacaattacatatgCCACACAGATATTGCACTGTCGTAGATAAATGCATAATCGCATGaaatcagattaaataaaactttttagaTAAAAACAATGAGCATGAAGCTGTGTCGTCAGTCAGTCGTTTGCCGTCATGCTTTCGGCCAGTCGTTAGAAAGCAACTTTCCTCGACCGCTCAATCTGACGCAGCCGCCTCGCCGTAGCAACCCATGTCTGCAGGATGCCTGTTAAACATCTCTTGATCTGCTGTCTCCAAACGTCTGGCatacattctaaatcataaacgTCTTAAAGACAACTAATAGACGTCAACTCGACGTCTAAAAACGAAGATGTATTTAACTGTTTACACtgtattgaaataaagctgcgttgttgacttgttttttattgtcatgGTTATATGTcacgatatttaaaaaaactgcaaacatGGAGGAAAACGTACAAGGTGGGGTTGTGGATTAATTGATTGTATGAGGTGTTTGTGCacgtcattattattttatttttataattactgCAGAACTTATAAATACATAGAAGCTTAGGGAAAGGAATGGTGGtgtctttaataatgaaaaaaacaacaaactgaaatgaggagggttttcatttttaaatgtaaatctcctcgttaaaaaaatgaacaaacattaTGTTATACTACCAGAAaaatcaatattatatttttacatttacaatgtaATCAATATTATACGTATTAAAGGCCAAATAAGAATCTCATCAGGTTTTCCaagctttttaaatttttttccaaaatcatAACTCAGTGACAATATATGTTCAGctttactttttaacattttttattatcattattatttaatatttttaccaaTCATCAAAGCTTGGAGATTTACTTTAAAGCGGATTACTCACTAAAAACTTGAATCGTGTTTTCAGACCAGTGTGTGAGTCATTTACCTTTTTTAGTTAATCTTTCCATCGATGCCATTATGTTGTAAATTCAGATTGACGAACACAAGAGATGGGATTTAGCACCAATCGCAGC

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222228.1 True 3436 mRNA 0.36 2 12414582 12421657

Neighbor

gene id symbol gene type direction distance location
LOC122328076 LOC107659298,LOC107716432,LOC107570368,LOC107575070 coding upstream 2741 12408361 ~ 12411841 (+)
aars2 aars2,LOC107715740,LOC107655390,LOC107575073 coding upstream 6350 12398320 ~ 12408232 (+)
rrbp1b LOC107659340,LOC107741526,LOC107715739,LOC107655391 coding upstream 17136 12385990 ~ 12397446 (+)
dzank1 dzank1,LOC107563543,LOC107715701 coding upstream 41425 12364335 ~ 12373157 (+)
lpar3 lpar3,LOC107564924,LOC107664802,LOC107655404,LOC107563520,LOC107715712 coding upstream 241284 12164382 ~ 12173298 (+)
LOC122327055 LOC107569129,LOC107655331,LOC107715742,LOC107659297,LOC107716435 coding downstream 24 12421681 ~ 12424702 (+)
LOC122327840 NA coding downstream 47461 12469118 ~ 12471335 (+)
LOC122328225 LOC107716435,LOC107659297,LOC107569129,LOC107715742 coding downstream 51596 12473253 ~ 12478935 (+)
vasna vasna,LOC107565178,LOC107716440,LOC107659336,LOC107569128,LOC107655389,LOC107715741 coding downstream 63548 12485205 ~ 12503977 (+)
dnaja3b dnaja3b,LOC107716437,LOC107659308,LOC107655350,LOC107715716,LOC554962,LOC107569120 coding downstream 114440 12536097 ~ 12542684 (+)
G152028 NA non-coding upstream 82737 12306554 ~ 12331845 (+)
G151983 NA non-coding upstream 161296 12252841 ~ 12253286 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding upstream 175138 12239108 ~ 12239444 (+)
G152015 LOC107570371,LOC107664873 non-coding upstream 197736 12216447 ~ 12216846 (+)
G151999 NA non-coding upstream 366317 12045852 ~ 12048265 (+)
G152068 NA non-coding downstream 5099 12426756 ~ 12426972 (+)
G152095 NA non-coding downstream 157625 12579282 ~ 12617819 (+)
G152092 NA non-coding downstream 159182 12580839 ~ 12620676 (+)
G152101 NA non-coding downstream 168256 12589913 ~ 12629300 (+)
G152083 NA non-coding downstream 182431 12604088 ~ 12655074 (+)
G152043 LOC107741571 other upstream 68832 12345206 ~ 12345750 (+)
G152032 NA other upstream 119865 12293400 ~ 12294717 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other upstream 137974 12010469 ~ 12276608 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other upstream 225576 12175687 ~ 12189006 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other upstream 579448 11826565 ~ 11835134 (+)
LOC122327156 NA other downstream 645757 13067414 ~ 13098756 (+)
LOC122327162 NA other downstream 685849 13107506 ~ 13112733 (+)
LOC122327212 NA other downstream 754770 13176427 ~ 13180275 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 961496 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 983185 13404842 ~ 13509252 (+)

Expression


Co-expression Network