RNA id: TU228682


Basic Information

Item Value
RNA id TU228682
length 1178
RNA type TUCP
GC content 0.65
exon number 5
gene id G154424
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2923382 ~ 2956725 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGTAGTTTAGCGGATCTCCTCGCATCTTTAAGACCCCCCTTATGacagaagagtTCACTGTAATCACAGGTCAGGATGAGCACTCGAGCGTACTGCTCGCTCATTGCAGTTTTATTGTGTCTCTGCAGATGTTTGAGCATAACCGATGCTACTCGAGGACGCTCCAAAGTGACTGGTTTCTGTCCGGCGAGGCTCACGGTTGTACCGTCCCGTCGAGGATGTTCTTCTGACAGAGACTGCTCCAGAGAACACATATGCTGTCGTTTTGATCGGGGACCTGTGTGTGTGCCGCCTGTTTCCACAAAACCAGGAGAGTGTCCACCCGCCAGAATGTGTGGAAGATCATGTACCAGCTCCTGTGAAAGTGACTCTTGCTGTCCAGGCAACGAGAAGTGCTGCAGCAATGGATGTGGACGTCACTGTACAGATCCATATATAGTGAAACCGGGTCAATGTCCCAGACCAACGAGGACTCGAGTGTGTGATGAAAACTGTTTCCATGATGGTCAATGTCCTGCCAGACAGAAGTGTTGCCCAACGACCTGTGGCCGTTCATGCAGTAAACCATTgggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcggccagggccaaggaggccagggcGGCCAGGGCCAGGAGGCCAGGGCGGCcggccagggccaaggaggccaggccaaggaggccagggcagccagggccaaggaggccaggCGGCCAGGGCCAGGAGGCCAGGGCCAGGAGGCCAGGGcggccagggccaaggaggccagggccaaggaggccagggcggccagggccaaggaggccagggcGGCCAGGGCGGCCAGGGCGGCCAGGGcggccagggccaaggaggccagggccaaggaggccagggccaaggaggccagggcCAGGGAGGCCAGGGCCAGGGaggccagggccaaggaggccagggcgaaggcggccagggccaaggaggccagggcggccagggccaaggaggccaggACCAAGGCGGCCAGggccagggccaaggaggccagggccagggccaaggaggccagggccagggccaaggaggccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228687 lncRNA upstream 6348 2925345 ~ 2942568 (+) False LOC122329169
XR_006247846.1 lncRNA downstream 60092 3011181 ~ 3021971 (+) False LOC122328882
XR_006247845.1 lncRNA downstream 64103 3015192 ~ 3021971 (+) True LOC122328882
XR_006247847.1 lncRNA downstream 98309 3049398 ~ 3051276 (+) True LOC122328883
TU228786 lncRNA downstream 143162 3094251 ~ 3097035 (+) False mitfb
TU228801 lncRNA downstream 161433 3112522 ~ 3113171 (+) True G154487
XM_043225369.1 mRNA upstream 1061 2946012 ~ 2947855 (+) True LOC122329170
XM_043225368.1 mRNA upstream 5110 2940038 ~ 2943806 (+) True LOC122329169
XM_043225367.1 mRNA upstream 10198 2923380 ~ 2938718 (+) True LOC122329167
XM_043224882.1 mRNA upstream 31368 2904209 ~ 2917548 (+) True LOC122328848
XM_043225370.1 mRNA downstream 4020 2955109 ~ 2956917 (+) True LOC122329171
XM_043224888.1 mRNA downstream 14511 2965600 ~ 2976846 (+) True LOC122328851
XM_043224889.1 mRNA downstream 14511 2965600 ~ 2976846 (+) False LOC122328851
XM_043224893.1 mRNA downstream 14511 2965600 ~ 2976846 (+) False LOC122328851
XM_043224922.1 mRNA downstream 32249 2983338 ~ 2989016 (+) True LOC122328866
TU228661 other upstream 1204 2945990 ~ 2947712 (+) False G154424
TU228664 other upstream 1204 2945990 ~ 2947712 (+) False G154424
TU228662 other upstream 7181 2939995 ~ 2941735 (+) False G154424
TU228675 other upstream 10299 2923382 ~ 2938617 (+) False G154424
TU228677 other upstream 10299 2923382 ~ 2938617 (+) False G154424
TU228663 other downstream 3996 2955085 ~ 2956725 (+) False G154424
XR_006247841.1 other downstream 44080 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other downstream 44080 2995169 ~ 3009478 (+) False rbm10
TU229052 other downstream 743563 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 743563 3694652 ~ 3696638 (+) False ube2t

Expression Profile