RNA id: TU228786


Basic Information

Item Value
RNA id TU228786
length 2354
lncRNA type sense_over
GC content 0.37
exon number 2
gene id mitfb
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3060509 ~ 3097035 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAAGAATGATAATATGTTGAagactaaaaaagaaaagacaaagaaaaaatattttatatttaattctaacacttgtttgggttttttttattcttacttGGTGTAAAATGACTGACTATGCTTGTAATAATAAGCTGTACTGTTACTGTATATTTCTGCTGTGCTCAAGTCAGATGTACTGATGTTTGCCTTTGAGTAGCATTCAACTTGTGCCACTATTTTGATCACGTAGGTGCAACTATTATGTGTTGTTTCATAGAACTATGCAAAGATAACTTTCAGTTGAGAAATCAACCTGTATGTAATGGAAAGATGTTGTAAGAGTTTAGCGTAGGTAACAAAGTCAGACCACTGTAAAGTGCCTTACAAATCTGTcacttaaagcaatagttcacccaaaacttccaaacacgaacagcatttttttttttttatggtggaACACCGAAAGAGATATTTAGCAGAGaattcatgctgctcttttccatgcatTGAAAGTGAATGGGGAATAGAACTTATGGGGgccatcacaaaaaaaaaaaaaaaaaaaacttaacttaaTATCCCACAATTCtgcaattaatgcaaaaatggtTAGAAatgctaaactaaaaaaaactttctcgTAATTTCAAGTTTACATCTCgccatgttttttgtttgtttgttgttttttgcaaaaaaaaaagaaaaaaaaaggcaattgcgatatgtatgtatatatctcaCAACGTCACACTTCTTAGAATTAagtttgtctttcatttcagtttttgttcccgaataaaaaaatacggtaaaaaaCAGTAATTTGCAGTATTTTGTCGCAATTCAATAAtagcacctttttttttacaatttggaCGTTTGTTCTCAgttttgtgagtttatatcatgcaattctgagtttacatgttgcaattcagtttatttgtttgtgccgcaaaatgaaaaaatttaccatttttattttcttgtaattAGATCCATGCTGATCGCGGGGACTGCCAATTTCAAAAAAGACTAAAGAAACCCCCTGAATTCGTAAACATGGGTTTGGAGCGATGTGCGAGTAAGAAGGAGATCGTTCTAATTGTcaattttgtgtgaactattcctttaaatgaaatgctctATTCTGTATTTGTGACTTTAGACTTTAGGCAGTGGGACCTAACGGGTTCAGTCCTCGGGTGAAGTAGAGGGGACGATCTCTCAGTAGGACTTTGTTTTGTAGTGCTTCGAGGCACTGCGGTGTATTACATAAACTCCCTTGCCCCAATAGACAGAAACTACTGAAAGTCGTCCTCTGAATGTAACGTTACAGTGTTGACTACTAAAATGTTGCCAAATTCCAAGTGGAGTCTAAATATGCAGTGAAACTGTTATGTATCTCGTTGTGGATTTATAGCAAAACTGGCTGTTGCAATTTCTTCTTCCGAGCAATAATTTAGACAATCAGGTAACGGGTAAAGCACAAGGCTCCTGTATGAACGCGTACGCATCCGTGACATCAACGAAAGGTGCCTTCAAAACAGGCTTCCATTGAACTTCAACCAAACGTCTTTTAATATCAAACACAGTCTGTCTTTTATAGAAGTGTCTCGGCTAAAGATGGTTTTCGTTTTGTTAATATacttttgtattatatttttgaagCTTAACCAAACATTATTTAAGAAAGGAGCTTGTAAAGTTGATTTTTTTGGGGTTGAATCGAATTTCTTATAAAGCGTTAATTTCCTATGAATTCAGTACTGGAAGCCGGCCCACTTTAAACCTGTTGGGAAAGTCACCTTTCACTCAAAGCGCGAAGCTTCCGCTGAGAGGCTTCGTGAGGAACGTAGCATTTCATTGTTGGGTTTTAAAGCTTGTCAAGTGTATGAAAATGTTACAGACGTTGAAATAAAACTGAGTGGTTTTCGCAATTTCTGGAGGTTTTCATTCATGATTTAGCGCGTTTCATTTTGCAGCACAGATGTTTTTCTTGGTTGGGGAATATAATCAAGACTCAACGTTTCCTGTGGTGTGTTATTCTGGTTTCATGGTGGTTTCACACTGTTCATCACACCATTTCTTGAATGCTTGGCACACAATGCTCTCTTCTGTGTCATTGAAGATTTTGCTTTTCCCAGCGCTGTGGGCAGAGGCAGTCTCAGAGATCCTCCTGAGTGCTTGAGTCGTTCAGTCAGGGACCTCTGCACTAGATCCAGAGTACAGTCCCAATGCCACACAGGAAGATCTAGACTCCGCATACACTCAATGATACGTCTTTTCTCCTCTTCTGTCAGAAAGCCCATTTCGTGAGCCACATAGACCATGAAAGCCATGTCGATGTTTACCGCCTCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247847.1 lncRNA upstream 42975 3049398 ~ 3051276 (+) True LOC122328883
XR_006247846.1 lncRNA upstream 72280 3011181 ~ 3021971 (+) False LOC122328882
XR_006247845.1 lncRNA upstream 72280 3015192 ~ 3021971 (+) True LOC122328882
TU228686 lncRNA upstream 137116 2947774 ~ 2957135 (+) True G154425
TU228683 lncRNA upstream 144793 2945990 ~ 2949458 (+) False G154424
TU228801 lncRNA downstream 15487 3112522 ~ 3113171 (+) True G154487
TU228833 lncRNA downstream 109447 3206482 ~ 3206688 (+) True G154517
TU228883 lncRNA downstream 145180 3242215 ~ 3242722 (+) True G154561
XR_006247851.1 lncRNA downstream 217473 3314508 ~ 3315260 (+) True LOC122328887
TU228908 lncRNA downstream 297888 3394923 ~ 3395407 (+) True G154582
XM_043224874.1 mRNA upstream 84234 2995169 ~ 3010017 (+) False rbm10
XM_043224941.1 mRNA downstream 36496 3133531 ~ 3137978 (+) True twist3
XM_043224877.1 mRNA downstream 222406 3319441 ~ 3352334 (+) True LOC122328845
XM_043224878.1 mRNA downstream 222406 3319441 ~ 3352334 (+) False LOC122328845
XM_043224879.1 mRNA downstream 222406 3319441 ~ 3352334 (+) False LOC122328845
XM_043224936.1 mRNA downstream 334288 3431323 ~ 3433604 (+) True taf11
XR_006247841.1 other upstream 84641 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 84773 2995169 ~ 3009478 (+) False rbm10
TU228680 other upstream 137526 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 137526 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 143162 2948916 ~ 2951089 (+) True G154424
TU229052 other downstream 597617 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 597617 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 3495571 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 4128959 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 4202244 7299279 ~ 7304358 (+) False tcea2

Expression Profile