RNA id: XM_043224936.1


Basic Information

Item Value
RNA id XM_043224936.1
length 1174
RNA type mRNA
GC content 0.49
exon number 6
gene id taf11
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3431323 ~ 3433604 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAATCCGTGGAcgtggactcttattttgaagcgGACCGGAAGTTGTTTGTACCGAGTCTGAATTCCGTCTGGAGACGGGTATTTTGAGGAagatacttttttatttgactCCCTGCTCTTCTTAAGCGCTGTTTTCTACGCGGTTGTCGGTCTGAGCCCGAGCATGGCAGACCCGGCCCGTGTGAAACCTGACGCAGGGTTCAGAGAAGCAAGCGGGCCCACAGAGAGAGCCAAACCGAGCGAGGGGCCCGGGGACGCTCCGGGGGCCGGCGGTAAAGCCTCTGAACCCGCTGCTGTCCAGGCCGCTGCCAGAGAGGAGGGCAAAGCCAGGTCCGCAGAAGATGCTGCCGCCGCCGCCGGTGAGGAAGACGAAGAGGGATCTTCGTCACTTCATCCTCCTGCTGCTAAAAAACTGAAAGTGGAGCACGACAAGAAGAAGGAGAAACGCCATAAAGTTGATGAAGATGAAATACAAAAGATGCAAGTTTTAGTGTCCTCGTTCTCTGAAGAGCAGCTGAATCGCTACGAGATGTACCGACGCGCCGCTTTCCCAAAGGCAGCCATTAAAAGACTGATTCAGTCCATCACAGGATCCTCCGTCTCTCAGAACGTGGTCATCGCCATGTCAGGAATTGCCAAGGTGTTTGCCGGGGAGATTGTTGAGGAAGCTCTGGATGTGTGCGAGAAGTGGGGAGACACGCCTCCTCTGCAGCCCAAACACATGAGAGAAGCCGTCCGGAGACTGAAGAGCCGAGAGCAAATCCCCAACACCAAACACAAAAAGATCATCTTCCACTGAGCTCCAGGGCCGCTTGTGACTTCATTCTGTTTCAAAGGACTCTGGGAGTGTTTTTGTGGGGACGCCGAATGGACGCAGACATCTTTTTTCAGATATCTGTTGGGAACGCGCTTTTTGTTATCTGTCTCTGGTTTTATCCACAGTCTGGagcatgtgacaaaaaaaatcctgttaatGACTTTTAGGATGATAAATATTGTACTATTCCTAGCTGTCGCTCGAAAGTAAGTATACCATTGAAATGtctgttgatttgttttttaatctgttttattttgggaGTATGCGTGCAGTGATGttttgtgtattatataaaaatgccaTCTTTGGAGTTGAggcagaaaaaatgaaaaaaataaatattttggtgaaa

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006413 translational initiation biological_process
GO:0005634 nucleus cellular_component
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03135 TAF11; transcription initiation factor TFIID subunit 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228910 lncRNA upstream 30565 3400009 ~ 3400758 (+) True G154584
TU228908 lncRNA upstream 35916 3394923 ~ 3395407 (+) True G154582
XR_006247851.1 lncRNA upstream 116063 3314508 ~ 3315260 (+) True LOC122328887
TU228883 lncRNA upstream 188601 3242215 ~ 3242722 (+) True G154561
TU228833 lncRNA upstream 224635 3206482 ~ 3206688 (+) True G154517
TU229008 lncRNA downstream 166838 3600442 ~ 3600856 (+) True G154647
XR_006247898.1 lncRNA downstream 174759 3608363 ~ 3614844 (+) True LOC122329308
TU229029 lncRNA downstream 201160 3634764 ~ 3636277 (+) True G154661
TU229035 lncRNA downstream 206259 3639863 ~ 3640681 (+) True G154667
TU229041 lncRNA downstream 223495 3657099 ~ 3657405 (+) True G154673
XM_043224877.1 mRNA upstream 78989 3319441 ~ 3352334 (+) True LOC122328845
XM_043224878.1 mRNA upstream 78989 3319441 ~ 3352334 (+) False LOC122328845
XM_043224879.1 mRNA upstream 78989 3319441 ~ 3352334 (+) False LOC122328845
XM_043224941.1 mRNA upstream 293345 3133531 ~ 3137978 (+) True twist3
XM_043224912.1 mRNA upstream 335143 3060509 ~ 3096180 (+) False mitfb
XM_043224364.1 mRNA downstream 40412 3474016 ~ 3482861 (+) True ap4b1
XM_043224365.1 mRNA downstream 40421 3474025 ~ 3482861 (+) False ap4b1
XM_043224366.1 mRNA downstream 49408 3483012 ~ 3491622 (+) True zgc:101663
XM_043224367.1 mRNA downstream 49408 3483012 ~ 3491622 (+) False zgc:101663
XM_043224369.1 mRNA downstream 60533 3494137 ~ 3496896 (+) True LOC122328605
XR_006247841.1 other upstream 421713 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 421845 2995169 ~ 3009478 (+) False rbm10
TU228680 other upstream 474598 2948916 ~ 2956725 (+) False G154424
TU228663 other upstream 474598 2955085 ~ 2956725 (+) False G154424
TU228682 other upstream 480234 2948916 ~ 2951089 (+) True G154424
TU229052 other downstream 261048 3694652 ~ 3696638 (+) False ube2t
TU229053 other downstream 261048 3694652 ~ 3696638 (+) False ube2t
TU230095 other downstream 3159002 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3792390 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3865675 7299279 ~ 7304358 (+) False tcea2

Expression Profile