Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU228908 |
| length | 370 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G154582 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056721.1 |
| NCBI id | CM032090.1 |
| chromosome length | 19062720 |
| location | 3394923 ~ 3395407 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0044085 | cellular component biogenesis | biological_process |
| GO:0042692 | muscle cell differentiation | biological_process |
| GO:0031497 | chromatin assembly | biological_process |
| GO:0048468 | cell development | biological_process |
| GO:0006323 | DNA packaging | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:0022607 | cellular component assembly | biological_process |
| GO:0006333 | chromatin assembly or disassembly | biological_process |
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0071824 | protein-DNA complex subunit organization | biological_process |
| GO:0065004 | protein-DNA complex assembly | biological_process |
| GO:0034728 | nucleosome organization | biological_process |
| GO:0071840 | cellular component organization or biogenesis | biological_process |
| GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0014866 | skeletal myofibril assembly | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0071103 | DNA conformation change | biological_process |
| GO:0006996 | organelle organization | biological_process |
| GO:0007010 | cytoskeleton organization | biological_process |
| GO:0097435 | supramolecular fiber organization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0032989 | cellular component morphogenesis | biological_process |
| GO:0051276 | chromosome organization | biological_process |
| GO:0070925 | organelle assembly | biological_process |
| GO:0048646 | anatomical structure formation involved in morphogenesis | biological_process |
| GO:0030029 | actin filament-based process | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0016043 | cellular component organization | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_006247851.1 | lncRNA | upstream | 79663 | 3314508 ~ 3315260 (+) | True | LOC122328887 |
| TU228883 | lncRNA | upstream | 152201 | 3242215 ~ 3242722 (+) | True | G154561 |
| TU228833 | lncRNA | upstream | 188235 | 3206482 ~ 3206688 (+) | True | G154517 |
| TU228801 | lncRNA | upstream | 281752 | 3112522 ~ 3113171 (+) | True | G154487 |
| TU228786 | lncRNA | upstream | 297888 | 3094251 ~ 3097035 (+) | False | mitfb |
| TU228910 | lncRNA | downstream | 4602 | 3400009 ~ 3400758 (+) | True | G154584 |
| TU229008 | lncRNA | downstream | 205035 | 3600442 ~ 3600856 (+) | True | G154647 |
| XR_006247898.1 | lncRNA | downstream | 212956 | 3608363 ~ 3614844 (+) | True | LOC122329308 |
| TU229029 | lncRNA | downstream | 239357 | 3634764 ~ 3636277 (+) | True | G154661 |
| TU229035 | lncRNA | downstream | 244456 | 3639863 ~ 3640681 (+) | True | G154667 |
| XM_043224877.1 | mRNA | upstream | 42589 | 3319441 ~ 3352334 (+) | True | LOC122328845 |
| XM_043224878.1 | mRNA | upstream | 42589 | 3319441 ~ 3352334 (+) | False | LOC122328845 |
| XM_043224879.1 | mRNA | upstream | 42589 | 3319441 ~ 3352334 (+) | False | LOC122328845 |
| XM_043224941.1 | mRNA | upstream | 256945 | 3133531 ~ 3137978 (+) | True | twist3 |
| XM_043224912.1 | mRNA | upstream | 298743 | 3060509 ~ 3096180 (+) | False | mitfb |
| XM_043224936.1 | mRNA | downstream | 35916 | 3431323 ~ 3433604 (+) | True | taf11 |
| XM_043224364.1 | mRNA | downstream | 78609 | 3474016 ~ 3482861 (+) | True | ap4b1 |
| XM_043224365.1 | mRNA | downstream | 78618 | 3474025 ~ 3482861 (+) | False | ap4b1 |
| XM_043224366.1 | mRNA | downstream | 87605 | 3483012 ~ 3491622 (+) | True | zgc:101663 |
| XM_043224367.1 | mRNA | downstream | 87605 | 3483012 ~ 3491622 (+) | False | zgc:101663 |
| XR_006247841.1 | other | upstream | 385313 | 2995169 ~ 3009610 (+) | False | rbm10 |
| XR_006247840.1 | other | upstream | 385445 | 2995169 ~ 3009478 (+) | False | rbm10 |
| TU228680 | other | upstream | 438198 | 2948916 ~ 2956725 (+) | False | G154424 |
| TU228663 | other | upstream | 438198 | 2955085 ~ 2956725 (+) | False | G154424 |
| TU228682 | other | upstream | 443834 | 2948916 ~ 2951089 (+) | True | G154424 |
| TU229052 | other | downstream | 299245 | 3694652 ~ 3696638 (+) | False | ube2t |
| TU229053 | other | downstream | 299245 | 3694652 ~ 3696638 (+) | False | ube2t |
| TU230095 | other | downstream | 3197199 | 6592606 ~ 6594735 (+) | False | si:ch211-220i18.4 |
| TU230359 | other | downstream | 3830587 | 7225994 ~ 7238919 (+) | True | G155561 |
| TU230347 | other | downstream | 3903872 | 7299279 ~ 7304358 (+) | False | tcea2 |
