RNA id: TU230074


Basic Information

Item Value
RNA id TU230074
length 472
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G155360
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6458558 ~ 6459029 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTACACTGGAAAAACTGGCAAAAGTGAACAGAGAAAGAGGATTAGCCTCGATTATCACGATTTTCTAGTCGTGATATCCGATCACCAAAAGGATTTTCCTGCCTGCCACGCCTGCAAAAGGATGTGTGAACAAAGGAACAATTAGTCTGGCTCCTGAGTACACATGCATGTACGGACAAAGAAATGAGCTAATCGCTGAAACCTATCTTGACCCCCCTGcagttttaaaagcattcaCACATTGGATTAGGTCCATACCTGTTTGAAACAGGCTTCACAAAGATGAGTTTCAGAAGAGAAATTTGATACTGTGCCCACCACATTCCCAAAAAATCTACTTTGGGTTTGTtggttattttagtttatttagacAGAAAGAAATTTCTtacctaaaacataaaaactttaAACTGCTCAGGAATATGTCAGAATGGCATAAAGTCTTTTACGTGTGTTTCCAAGCAGAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230045 lncRNA upstream 749 6438508 ~ 6457809 (+) False LOC122328815
TU230043 lncRNA upstream 3026 6384561 ~ 6455532 (+) False LOC122328815
TU230039 lncRNA upstream 3026 6410045 ~ 6455532 (+) True LOC122328815
XR_006247836.1 lncRNA upstream 3955 6453423 ~ 6454603 (+) False LOC122328815
TU230063 lncRNA upstream 34478 6422223 ~ 6424080 (+) True G155351
XR_006247835.1 lncRNA downstream 2290 6461319 ~ 6482153 (+) True LOC122328814
TU230091 lncRNA downstream 142380 6601409 ~ 6602083 (+) True G155371
TU230092 lncRNA downstream 176852 6635881 ~ 6637488 (+) True G155372
TU230223 lncRNA downstream 244144 6703173 ~ 6705526 (+) True G155454
TU230224 lncRNA downstream 244482 6703511 ~ 6707259 (+) True G155455
XM_043224353.1 mRNA upstream 88573 6338411 ~ 6369985 (+) True foxp1a
XM_043224354.1 mRNA upstream 88573 6338411 ~ 6369985 (+) False foxp1a
XM_043224352.1 mRNA upstream 88573 6338414 ~ 6369985 (+) False foxp1a
XM_043224355.1 mRNA upstream 88573 6352331 ~ 6369985 (+) False foxp1a
XM_043224357.1 mRNA upstream 120420 6333323 ~ 6338138 (+) True eif4e3
XM_043224956.1 mRNA downstream 26399 6485428 ~ 6490071 (+) True krt8
XM_043225069.1 mRNA downstream 50662 6509691 ~ 6514093 (+) True krt5
XM_043225108.1 mRNA downstream 66582 6525611 ~ 6589601 (+) False plxnb1a
XM_043225111.1 mRNA downstream 66582 6525611 ~ 6589601 (+) False plxnb1a
XM_043225110.1 mRNA downstream 66583 6525612 ~ 6589601 (+) True plxnb1a
TU229052 other upstream 2761920 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 2761920 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 3448948 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 3449080 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 3501833 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 133577 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 766965 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 840250 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 1872712 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 2029057 8488086 ~ 8488641 (+) True G155799

Expression Profile