RNA id: TU230277


Basic Information

Item Value
RNA id TU230277
length 413
RNA type TUCP
GC content 0.44
exon number 8
gene id rps21
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6766608 ~ 6823032 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTTTCCTTTCCGCGTCGGCCATTTGTGATAATAGACAGCTGACTGACGGTCATCAGATAAAGTCGAGATGCAGAACGACGCTGGTGAGTTCGTGGACCTCTACGTCCCCCGTAAATGctCTGCTAGCAACAGAATTATTGGCGCCAAGGATCATGCCTCCATCCAGATCAACATTGCTGAGGTGGACAGGGCTACAGGCAGGTTCAATGGACAGTTCAAGACCTACGCCATCTGCGGCGCCATCCGTAGAATGGGTGAAGCTGATGACTCCCTCTTGAGGCTCGCGAAGAACGACAGCATTGTGGCGAAGTAAGCCCATGAACGCCTAAAAAGGAGGtttctttgtaaaataaaaaaaataaaattggaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230208 lncRNA downstream 148310 6624419 ~ 6625268 (-) True G155443
TU230195 lncRNA downstream 161054 6611993 ~ 6612524 (-) True G155435
TU230127 lncRNA downstream 259485 6509715 ~ 6514093 (-) True G155392
TU230121 lncRNA downstream 273829 6488624 ~ 6499749 (-) False G155391
TU230119 lncRNA downstream 284734 6485439 ~ 6488844 (-) True G155391
TU230288 lncRNA upstream 12397 6835375 ~ 6835589 (-) True G155508
TU230378 lncRNA upstream 14151 6837129 ~ 6838566 (-) True G155578
TU230388 lncRNA upstream 106708 6929686 ~ 7067824 (-) True G155586
TU230389 lncRNA upstream 240600 7063578 ~ 7067824 (-) False G155586
TU230405 lncRNA upstream 277330 7100308 ~ 7106154 (-) True G155597
XM_043224767.1 mRNA downstream 52008 6713359 ~ 6721570 (-) True osbpl2b
XM_043224772.1 mRNA downstream 60883 6708712 ~ 6712695 (-) False adrm1
XM_043223998.1 mRNA upstream 15829 6838807 ~ 6857465 (-) True cables2b
XM_043225551.1 mRNA upstream 35029 6858007 ~ 6867300 (-) True ccm2l
XM_043224119.1 mRNA upstream 48999 6871977 ~ 6926416 (-) True LOC122328429
XM_043224124.1 mRNA upstream 141764 6964742 ~ 6981961 (-) True LOC122328436
XM_043225536.1 mRNA upstream 171189 6994167 ~ 7003523 (-) True LOC122329304
TU230261 other downstream 41692 6730851 ~ 6731886 (-) True G155489
TU229892 other downstream 1293759 5477914 ~ 5479819 (-) False LOC122329286
TU229887 other downstream 1318531 5454417 ~ 5455047 (-) True G155227
TU229703 other downstream 1939058 4831818 ~ 4834520 (-) False LOC122329181
XR_006247893.1 other downstream 2578582 4173914 ~ 4194996 (-) False LOC122329268
TU230387 other upstream 35037 6858015 ~ 6860648 (-) False ccm2l
TU230380 other upstream 41447 6864425 ~ 6867281 (-) False ccm2l
TU230394 other upstream 143849 6966827 ~ 6981789 (-) False LOC122328436
TU230386 other upstream 171203 6994181 ~ 6996809 (-) False LOC122329304
TU230379 other upstream 177607 7000585 ~ 7003487 (-) False LOC122329304

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU302132 False 447 TUCP 0.44 7 NC_047610.1 15117112 ~ 15167668 (+)