RNA id: TU231767


Basic Information

Item Value
RNA id TU231767
length 2117
lncRNA type read_through
GC content 0.41
exon number 3
gene id G156496
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10829167 ~ 10901823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTATGTGGCTACAATTTTTATGGTTACGGTTCAAATGTACGCAAAGTACATTTCACTCAGTCTgtgaagtaatttttttaacataaatttgTGTTGTTGGTTGTTTCCAaacttaaaagtgtttttttattttttTATTGGGCTGTTTAAGACCATTTATtgtgctgaaaaacacagaataagacaagtaacaaaaacatttccatcAGCGTTACAgatgtgtaaaaatgtacaaaatcttTTTGCAAGTTTCAGCTCTTCCATTTATTACGTGATATATAAAACAATggatacaaaaaacaaaacaaaaaagaaatactaaAACAGCCCATTATATGGATGGGaaattaatacagaaaaaaaaaggggagCCAATTCCGTCCCCTAGCGTTGGTGTCCTGATCCGGTGTCTGATTCAGGAATGAGGAGAACTCCCCGCCTCCGACTTGCCTCCATCGCTACTTTCACTCGCTTGCCTCATCACCATCTCCCGGGCAATACATGTCACCTGCCCATTGGTCACACTCACCACACCTGACCTGCAGAGAGCCAATCAGATTAAGggatttagaatttaaaaactgATGTCAAACTAGCACCCCTTGTCATGAAATCTGCAATTAAATGTGCATCAGCACTTGGCAAGGCCTTCGTGTTACATGCACCAGCTTGGGAGAAACTCAATCCAGTGACTCACTTCTGCTGAGCTTCCTCAGTAAGAGTTCCCATACCAGGCTGGTTCTGCTTCCCAAAGAAGAAACTGGACCACCAATGCCCAGAATCCTGTTTGGGCAGACCTAAAGCATAATTAAACAGGTCAGAATGAGCAACGCGCCGCCTGCCTAATCTTCTAATGGATTTAGGGCACAATGAGGTAGACACTAACGCAAATTGCAGGTAAAAagtctttaaacaaaaagacatgCAAGCTGATGGACGCACGCAAGCATGAGTCGTTTTTGTAACTGACAAATTCCTCAACAGCTGATTATTCAGAAGCAATCAGACGAGTGTTCAGTTGCGATATGGGTACAAACTTCATTGCATAACGAGCAAATGTCTTCATGTCATGTCAAGATGTTGCAATGAAGTATTGATTGAAGTGGGGGGCTGAAACGAgagtgaaatgaaatgtaactCACCTGGGTGATGTGGAATGACCTCCCCACTGTACTCTGAACTGCCACACGAGCTGCTACTGGATGTAGAGCCAATGcgccctgaaaaaaaaaaaaagtcttataaaGGGAAATTCTCTATTGCTATAGGAGTAAAGCACTGGCAAAGGCAACTTACTTCTGTAGTAGTCGTGAGTAGCAACCAGTGAACCACTAGATGGGATGGCTGCCATTTTACAGACTTGTGTAAATAGTGACTTAGATGGAAACCCTGTGAAGAGATTGAGAAGACATTTAATGCCGAGAGAGAATTTGATGTAAATAACACAACCTAGTTAATAGCTTCTCATCTTAAAATGGATTTTCGTTAATAGAGATAGATTCAGGAAAGGCATTTGAGAGCTTTTATCTCTCACGTGTAGTTTGAAACCTTGTATTGCTTACATATTGGTCTTGTAGCCATTTCTCGTTGTTACACGATTTAATGCCAAACCACAAGATTAATCGAACTGACATTATGCCGTATGAGACATCCATTACAAacactgtgtttttaatcaaacgGCAAGTAACACGAGGAAGTTACAGTAATCCCGTAGGAATTACAGCAGTTGAGATCACAAAGGAAACGTTTTTTACTCAAATGCACACGTGTAATGAAAACATACCCCACTACAGCAAAACACACGATACTAATCGAGGTAACGCTCAGATTCTCTGACCCAAACAATGAGTAACGTTTCCCTTTAAAACTGTGAAGACCACCATCTCACCTCCTTTTGCAGCTCTTGCTGATGGTATTAGAGCACTCTTCTCAATTCAGTCGGAGGCTTTGGGGAGAAAACGCTAGGCGACGGAGCCCATTTGAAAAGGTTGGGATGGATAAGACCCTCCACGTCCTGAAATATCTACCGCAGTGCTGTCTAACAAAAACAACTCGTTTTCCTGCATTTATACAGAGACGAGACGTCGACGACCAGCCGTGATGAAGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231666 lncRNA upstream 153664 10727933 ~ 10728230 (+) True G156432
TU231665 lncRNA upstream 154730 10726918 ~ 10727164 (+) True G156431
TU231646 lncRNA upstream 178801 10702729 ~ 10703093 (+) True G156417
TU231643 lncRNA upstream 180999 10698798 ~ 10700895 (+) True G156414
TU231640 lncRNA upstream 185336 10696302 ~ 10696558 (+) True G156413
TU231773 lncRNA downstream 12081 10913904 ~ 10920405 (+) False G156497
TU231851 lncRNA downstream 131968 11033791 ~ 11035495 (+) True G156551
TU231865 lncRNA downstream 175539 11077362 ~ 11078675 (+) False LOC122328437
TU231864 lncRNA downstream 181965 11083788 ~ 11085604 (+) False LOC122328437
TU231887 lncRNA downstream 222269 11124092 ~ 11126634 (+) True G156572
XM_043225170.1 mRNA upstream 11143 10786884 ~ 10870751 (+) True nol4lb
XM_043225171.1 mRNA upstream 11143 10786884 ~ 10870751 (+) False nol4lb
XM_043223977.1 mRNA upstream 109695 10765862 ~ 10772199 (+) True commd7
XM_043224311.1 mRNA upstream 223147 10646963 ~ 10658747 (+) True LOC122328564
XM_043224618.1 mRNA upstream 315237 10555276 ~ 10566657 (+) True LOC122328734
XM_043224407.1 mRNA downstream 33140 10934963 ~ 10938573 (+) True gid8b
XM_043224408.1 mRNA downstream 33247 10935070 ~ 10938573 (+) False gid8b
XM_043224390.1 mRNA downstream 37572 10939395 ~ 10948900 (+) True slc17a9b
XM_043225380.1 mRNA downstream 139257 11041080 ~ 11049656 (+) True rnd1a
XM_043224234.1 mRNA downstream 156336 11058159 ~ 11062247 (+) True prim1
TU231641 other upstream 180999 10698927 ~ 10700895 (+) False G156414
TU231625 other upstream 309648 10563344 ~ 10572246 (+) True G156399
TU231621 other upstream 327174 10551097 ~ 10554720 (+) True LOC122329061
TU231564 other upstream 463996 10415671 ~ 10417898 (+) False LOC122328383
XR_006247902.1 other upstream 1046415 9835395 ~ 9835479 (+) True LOC122329332
unassigned_transcript_2617 other downstream 246 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231770 other downstream 12081 10913904 ~ 10923988 (+) True G156497
XR_006247906.1 other downstream 173268 11075091 ~ 11075166 (+) True LOC122329336
XR_006247905.1 other downstream 173839 11075662 ~ 11075737 (+) True LOC122329335
TU231904 other downstream 272598 11174421 ~ 11177033 (+) True G156586

Expression Profile