RNA id: unassigned_transcript_2617


Basic Information

Item Value
RNA id unassigned_transcript_2617
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_40
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10902069 ~ 10902140 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGcggcccgggttcgattcccggtcaGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231769 lncRNA upstream 246 10829167 ~ 10901823 (+) False G156496
TU231767 lncRNA upstream 246 10881894 ~ 10901823 (+) False G156496
TU231764 lncRNA upstream 246 10895108 ~ 10901823 (+) True G156496
TU231765 lncRNA upstream 246 10895108 ~ 10901823 (+) False G156496
TU231768 lncRNA upstream 246 10895108 ~ 10901823 (+) False G156496
TU231773 lncRNA downstream 11764 10913904 ~ 10920405 (+) False G156497
TU231851 lncRNA downstream 131651 11033791 ~ 11035495 (+) True G156551
TU231865 lncRNA downstream 175222 11077362 ~ 11078675 (+) False LOC122328437
TU231864 lncRNA downstream 181648 11083788 ~ 11085604 (+) False LOC122328437
TU231887 lncRNA downstream 221952 11124092 ~ 11126634 (+) True G156572
XM_043225172.1 mRNA upstream 9524 10884466 ~ 10892545 (+) True ptk6b
XM_043225173.1 mRNA upstream 17766 10874824 ~ 10884303 (+) True srms
XM_043225170.1 mRNA upstream 31318 10786884 ~ 10870751 (+) True nol4lb
XM_043225171.1 mRNA upstream 31318 10786884 ~ 10870751 (+) False nol4lb
XM_043223977.1 mRNA upstream 129870 10765862 ~ 10772199 (+) True commd7
XM_043224407.1 mRNA downstream 32823 10934963 ~ 10938573 (+) True gid8b
XM_043224408.1 mRNA downstream 32930 10935070 ~ 10938573 (+) False gid8b
XM_043224390.1 mRNA downstream 37255 10939395 ~ 10948900 (+) True slc17a9b
XM_043225380.1 mRNA downstream 138940 11041080 ~ 11049656 (+) True rnd1a
XM_043224234.1 mRNA downstream 156019 11058159 ~ 11062247 (+) True prim1
TU231641 other upstream 201174 10698927 ~ 10700895 (+) False G156414
TU231625 other upstream 329823 10563344 ~ 10572246 (+) True G156399
TU231621 other upstream 347349 10551097 ~ 10554720 (+) True LOC122329061
TU231564 other upstream 484171 10415671 ~ 10417898 (+) False LOC122328383
XR_006247902.1 other upstream 1066590 9835395 ~ 9835479 (+) True LOC122329332
TU231770 other downstream 11764 10913904 ~ 10923988 (+) True G156497
XR_006247906.1 other downstream 172951 11075091 ~ 11075166 (+) True LOC122329336
XR_006247905.1 other downstream 173522 11075662 ~ 11075737 (+) True LOC122329335
TU231904 other downstream 272281 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 610485 11512625 ~ 11512698 (+) True trnan-guu_35

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnae-cuc-378 True 72 mRNA 0.65 1 NC_048592.1 9394563 ~ 9394634 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_1429 True 72 tRNA 0.65 1 NC_053134.1 2677463 ~ 2677534 (+)
striped catfish (Pangasianodon hypophthalmus) trnae-cuc_42 True 72 tRNA 0.65 1 NC_047623.1 3311361 ~ 3311432 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1429 True 73 tRNA 0.59 1 NC_056707.1 5443231 ~ 5443303 (+)
mexican tetra (Astyanax mexicanus) trnae-cuc_42 True 72 tRNA 0.67 1 NW_019171900.1 193345 ~ 193416 (+)
mexican tetra (Astyanax mexicanus) trnae-cuc_75 True 72 tRNA 0.65 1 NW_019171913.1 1170 ~ 1241 (+)