RNA id: TU235490


Basic Information

Item Value
RNA id TU235490
length 2427
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G159048
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18642262 ~ 18644688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTAATAACagtaagaaaatgttttattgactgatacatatagtcatatatataaaatcattgcATAGCGTGTCAAGGTTGTTTGACACAAAAAGTACACGCTATGTCAAGTTACTTAAAATACCATTCTACATTTGCAAGGCCTATTGAGTCAGGCCAGATATTAACAGTCAGTTGTTAACAGTCAGTTGTTAAACGGAATAAACAGACATCTAATCTTTGAACTAAAGTGACAGTGACACAAATTAAATACACCCACTTTGGGTGTGAATGCTTATTGTTCACCGTTTCCGCTGTTGCGCAACAATAGACAGAAGTGCTTGTTTTAAGCCATATCTTTTCATATCTCTGGGCCAGGTGCTACCCTCTGCATTCCGTAGCTGACAGGCTTGATGGCCTGCTTGGCATGAACATTTGTCTCTGTAAACAATACTGTATCCATAGATTCGTGTGCAAGAGGTTTTTCACgtaacatacaaaaataaaatgcaaaggaAATTCTTTTCTATTACAAAATCAAGTAACGTGATATATAGGTAGTAACACACATAACCAGGATTTAAGTACTGGCATGTACAAAAGGCTTAACCAAAACAGCTAAACCAATACAGCATTTTGAGGTCCTAAAACCAGCATGATAATTAGCCATTTTTCAACCATGTGTTCTCTTTGGAATTTCCTATGGGTTTTTAGAATGCCGGGTTTGGATTTATGAGTACAAGACGATCTGTACTTAGCATTCCCTTAAGAAATATTAATGTCAACATAAATTACAGATCAGCAAGCTGTAAAACAAGGACTAAAACTTCCATGAGGACATGTGTTTTTTGTCCTTATATAATAGCAATTTGTTACGCATGCTTTCAGGTGAGAGGTATAAATGTGTGTGGTTTATGTTGTACGGCAAAATCTCAAACACAGAATTACTCACAAACTTTAACTCACCATTCTAAAACCTCATAAGAAATTGGTGAATTAGCAGGTTGAATATGACCATAATGAACAAGTTAGCCAACTCGGTCAGGCAGGGAGCTTCTCTGATTGgctaaatactaaaatgtttaCAGAGTCAAGGGATCAGGTCACATGTGATCACATCCAATTGACATCTGCAAGATGCATTTGTGTTTGCTGCAATATGGCGTCTATCGGATGGCAAATAGATGTTTAaaagatgtctttaagatgttgaTGATTTAGAATGTATATGAATCTGACATCTTACGGATGTTCGTGCACAACAGACGCTTTCCAGATCACGCGATCTGTAACAGACGTCTTGCAGACGCACGTGTGCCATCTCGGGCTAACCAGGTCATTTTATGCGTGATACTGGGCAAACCGGGGCTTCTAACATGACCCAAGTTAATCCAGCTCTCGAAGAGTCTTCCCCGACTCCGCCGCATTTCTGCAGCTGTAAAGCCACTTGATGATCCGAGCGTTGCGCTCGACCACCGACGACCCCTGACGCACGGTCTCCTGCAGTTCCTCCTCGTGCGGGCCGTCGCTGCCCCTCGAGAACCCGTCATCCGAAGTCGAGACGCTGATGCTCCGGATTTTGGAGCCGGTGTCTTCGGAGCGCGCGGAGAAGTTCTCTCTGCCCAGCGACTCGACGACGTCGCCCTCGAGTCCGCAGTACTTGAAGAACGCGTCGAAGTCCGCGAAGTTTCTCGAGTAGCGCGAGCTGATGTCGGAGCTGGAGCGCGCCACCCCCTTGCGGCTCCTGCGGTCCTGCTCCTGGGTTTCGGCGACTTTCCTGTGCAGAGGTCCTTTCGGCTTTCCGTTCGTCTCGCCCGAGTGCCCGTTAGAGATGGTCAAAGTCACCTGAGCGGCCTTACGTGTGTCGCATTCGCCACCGCGCGCCGCTGAAAACGCGTTTGTCTTCTCTTTAAAGGCGAAGAGCGACTTTTTAATCAATCTCCTACTCCCGCCAGGCGATTCTCTTAAGAGTTCGCACTTTTGCCTGTATAGTAAAATGGAGTCTCGTTTCTTCGAGCTGCTCCGTCTCACCACATTAATTTCTTCTTCGGGCGACCGTGTATCCTCAACATCAACGCTGTTATTAACGGAACCGTGCCCGTTTGAAGACCCTTGGCTGCTCACGGAAGCAGACCCGTCGCTGATAGCTGGTTCCTGCGTGGAACCGACCACTTGTTGGCTTTTTACATATTGAGGTTTGGTGGCTGCCAACCTCTCCACCGCGCTGACGCGTCCTCTATTCGCCTCGCTTTCTCGCTCCATCTGTCTTCTCAAAAACTCGGGTCCCTTCACAAGAATGCGCGACGCGTCCACGTCGGCCGAGCCTTGCGTTTTCTTCAGCATTATACAGTTCGGACGAGTATTTCGTTTTACGTCCACGACGGCCGAGTTGCAAAACGTTTCGAGGGTTCCGATAGCGAGGAGAACGCACTGACGCACACCTTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247881.1 lncRNA downstream 27117 18613676 ~ 18615145 (-) True LOC122329081
TU235375 lncRNA downstream 79120 18559420 ~ 18563142 (-) False G158980
TU235376 lncRNA downstream 79120 18559420 ~ 18563142 (-) True G158980
XR_006247816.1 lncRNA downstream 185756 18421859 ~ 18456506 (-) True LOC122328626
TU235500 lncRNA upstream 3399 18648087 ~ 18648625 (-) True G159052
TU235504 lncRNA upstream 19714 18664402 ~ 18731816 (-) True G159054
TU235505 lncRNA upstream 25827 18670515 ~ 18672766 (-) True G159055
TU235513 lncRNA upstream 34848 18679536 ~ 18680426 (-) True G159063
TU235539 lncRNA upstream 119045 18763733 ~ 18763933 (-) True G159079
XM_043225284.1 mRNA downstream 4764 18624388 ~ 18637498 (-) True acp1
XM_043225285.1 mRNA downstream 4764 18624388 ~ 18637498 (-) False acp1
XM_043224447.1 mRNA downstream 49408 18585124 ~ 18592854 (-) False ccnt1
XM_043224446.1 mRNA downstream 49408 18585124 ~ 18592854 (-) True ccnt1
XM_043224448.1 mRNA downstream 58230 18579092 ~ 18584032 (-) True pmelb
XM_043225327.1 mRNA upstream 8764 18653452 ~ 18666191 (-) False si:ch211-225h24.2
XM_043225326.1 mRNA upstream 8764 18653452 ~ 18666188 (-) True si:ch211-225h24.2
XM_043224665.1 mRNA upstream 170069 18814757 ~ 18829293 (-) True si:ch211-236h17.3
XM_043224322.1 mRNA upstream 341264 18985952 ~ 19059410 (-) True LOC122328577
XR_006247822.1 other downstream 406726 18231643 ~ 18235536 (-) False hnrnpa1b
TU235255 other downstream 594384 18045938 ~ 18047878 (-) False march9
TU234899 other downstream 1298877 17339267 ~ 17343385 (-) True G158609
TU234864 other downstream 1462483 17176652 ~ 17179779 (-) False slc48a1a
TU234495 other downstream 2283557 16357652 ~ 16358705 (-) False G158336
TU235534 other upstream 102703 18747391 ~ 18754712 (-) True G159076

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044868 True 1315 lncRNA 0.47 2 NC_007134.7 35489518 ~ 35498165 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_02657735_02658754.mRNA True 3155 mRNA 0.42 1 CI01000001 2657447 ~ 2660601 (+)