RNA id: CI01000001_02657735_02658754.mRNA


Basic Information

Item Value
RNA id CI01000001_02657735_02658754.mRNA
length 3155
RNA type mRNA
GC content 0.42
exon number 1
gene id CI01000001_02657735_02658754
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 2657447 ~ 2660601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATATACAAGCACAAATTACGAGCCGTTAAGTTACAGTTTCCCGTTTCCTGACAGTATTCCTCAGACATCTCTTGTGCCGAGCTCGCGCTGCCTTGACCTGTTAGTGGGTGGAGTAGGTGAGCAGTGTGAACAGGTAAAGTAAAGGTGTGCGTCAGTACTGTGCGTTCTCTTCTATCTACTAACTATCGGACCCCTCAACACATTTTACAACAGTTGCGACATTGCTGTTGTGGATTTAACACTAATTTAACACTGTGGATTATAATACTAATCTGGACTGCATAATGCTGAAGAAAACGCAAGGCTCGGCCGACGCGGATGCGTCGCGCATTCTTGTGAAGGGGCCAGAGTTTTTGAGGAGACAGATGGAGCGAGAAAGCGAGGCGAATAAAGGACGCATCAGTGCGGTGGAGAGGTTGGCAGCCACTAAACCTCAATATGTAAAAAGCCAACAAGTGGTCGGTTCGACTCAGGAACCGGTTATCAGCATCGGGTCTGCCTCCGTGAGTAGTCAAGGGTCTTCAAACGGGCACGGTTCCGTTAAGAACTCAACTAATGTTGATGTTAAGGACATACAGTCGCCTGAAGAAGATAGCAATGTGGTAAGACGTAGCAGCTCGAAGAAACGACCGGACTCGATTTTATTATACAGACAGAAGTGTGAACTCATGAGAGGATTGCCTGGCGGGAGTAGGAGATTGATTAAAAAGTCATTATTCTCTCTTAAAGAGAAGACAAACGCATTTCCTGAGACGCGAGGTGGTGAGTCTGACGTTGAGATAACTAACAGAAAAGACCTCACGCTTTGCTCCACACGTAATGACTGCGGGAAAGAGTCCACTCAGCTAACTTTATCCATCTCAAACGGGAAGCCAGGTGAGACAAACTATGTGCTGAAAGGACCTCCACACAGGAGACTCGCTGAAACCCAAGAGCAGGAGCGCAAGAGTCGGAGGGGGGTCGCGCGATCCAGCTCTGACATCAGCTCGCGCTACTCGAAAAACTTCGCGGACTTCGACGCTTTCTTCAAATACTGCGGGCTTGAGGGTGACGTAGTTGAGTCCCTGGGCAAAGAGAACTTTTCCGCGCGCTCGGAGGACCTCAGCTCCAGAATCCGGAGCACCAGCGTCTCAACGTCAGATGACGGATTCTCGAGGAGCAGCGACGGCCTGCAAGAGGAGGAATTACAGGAGACTGTCCGTCAAGGGACGTCAGTTGTCGAGCGCAACGCTCGGATCATCAAGTGGCTTTACAGCTGCAGAAATGCAGCGGAGTCGGGAAAGACTCTGCGAGATCTGGATTAAATTGGGTCATGATAAACGTGCTGTAAGCTATTTTTTTCCCTATACAACGCATAATGTCCTGGCTACCTGACTTAAATATACTGGGCATATGTATATGTGACATCCCTTGACTGTTAACAACAGAAAAGAGAGTCCCGCGCGTTTTTAGCCAATCAGAAAACTAGCAATCAGTCTGGCTGATTCGGCTAATTCACAAATTCTAAAAGTTCTTAAAGGGTTTTAGGATGTTTTTTTTTTTTTTTTTTTTCAACATAAGTTACACACATTAACATTACCTCACACCTGAATTTTGAAGCCACTGTTCTTTGTAAACATAAATTGCTAACAAATTGCTATATATAAGGACTACAACAGTTTTGTCAAACATTTACACAACCTTGTGGTATAGTCTTTATTTAGCAGCTTGTTAGCAGCTAGACTGTAATTTCTGTTGACTTGAACATTTCTTAAAGTCCCCCTGAAATCAAAATTTAAGTTTTTTAGCTTTTAGTATGAATATGTTAGCCTTAATATTATGAATAAGCTGCTGTGTTCCAAAACAATGACAAAATTCGCATTTAGGAGATATAAGCATTCAAAATTTACAGTCTCTCACTTCCGCTAAAATAGATCATGGATTTTGATGACATCACATCGCACTTCAGCTTCTCATCAAATCTTCTGTCCAATCAAATGCTCTCTAGAATCTGTAGTCCCGCCCCCTCCTACACTATCAACAGACACTGAAGCTGCGGCTGAAATCGGTGTCTGTTGATAGTGTAGGAGGGGCGGGACTTCAAATATAACTACAGTATATAGCGAACTATTCATACAGTGTAAATATACCATTGACGCGAATCAAGTCCGTTTCACGTTAGTATAATGTGAACCGCGGCAGCGTGAGCACAGGGACACAAGAGCTCAGAGCGGATCATATCCGCGAGTCAGCTCAGAACACGAAAGATATCGGACCCATTTACATTCTGCACAGAATGCTGTATTTTAAAGTGATATAGAGGAGATTCGGAGGAGAAACTGTTAGAGATTAGAAGGAAATAGAGGTTTTACTGAGTTTAACGTAAAAAAAGGGGCGGAGCTGTTCAATATATCCTGCCCTGTCTTCCTGTTTCAGTTGAAATTACGTCAACTCATTGAATAATGCTGCGCGTTCCAAGACACTTCAGCGGGCCTTTAAATGCTAATACAGACTTTATTTTACCCATTTTAAACGCCCATTCTAAAAACCCTATAGAAAATTACGTAGAGAATGCAAATTGCTAATTCTCTTGCTGGTTTTAGGACCTCAAACTGCTGTATTCGTTCAAGCTTTTTTTGGTTAAGCATTTTCTACGCCAGTACTTGATCCTGGTTAATTATCTACCTAGATATCATGTTACTTGATTTTATAACAAATTTAAAGTTGTTTTTATATTTCCATTGCACTGTATTATGTGAAAACTGCCTTTGCACTCAAATCTATAGTTTACAGACACAATTTGTCGTTCAGGTCAAACAAGTTATGATACACGTTAGCTCTGGAATGCAGAAAGTAGCCCTGGTCCTGAGATATGGAAAGATATGGTTTCAAACAAGCAGTTTTGTCCATTGTTGCGTAACAGCGGAAGCGATGAACAAAAAGCAAGTACATTCACATCCAGTGTGGGTGTATAATTTGTGCCACTGTCAAATAAGTTCAAAGATTAGGTGTCTGTTTACCCTAACTGAATACTGACTGTTTAGTCATGTCTTCCCTGACTCACTATGCCTTAAATTGCATAAAATAAGTCTGAAGTAACTTGATAAGGTATTGAGTCAAACATCCTTACACAATATGTAAAAATGCTGCATGTATGAATATGAACATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15626 lncRNA upstream 79633 2577519 ~ 2577814 (+) True G13973
TU15624 lncRNA upstream 92140 2564734 ~ 2565307 (+) True G13971
TU15493 lncRNA upstream 217355 2425601 ~ 2440092 (+) True G13869
TU15560 lncRNA upstream 276307 2380892 ~ 2381140 (+) True G13924
TU15558 lncRNA upstream 289236 2367979 ~ 2368211 (+) True G13922
TU16282 lncRNA downstream 312258 2972859 ~ 2973084 (+) True G14555
TU16334 lncRNA downstream 417589 3078190 ~ 3078503 (+) True G14597
TU16498 lncRNA downstream 655552 3316153 ~ 3316434 (+) True G14752
TU16499 lncRNA downstream 656620 3317221 ~ 3317458 (+) True G14753
TU16502 lncRNA downstream 665476 3326077 ~ 3326290 (+) True CI01000001_03306094_03325686
CI01000001_02632096_02633641.mRNA mRNA upstream 22454 2631159 ~ 2634993 (+) True CI01000001_02632096_02633641
CI01000001_02591835_02593987.mRNA mRNA upstream 63117 2591835 ~ 2594330 (+) True CI01000001_02591835_02593987
CI01000001_02578747_02580442.mRNA mRNA upstream 76954 2578579 ~ 2580493 (+) True CI01000001_02578747_02580442
CI01000001_02567315_02569427.mRNA mRNA upstream 87842 2566675 ~ 2569605 (+) True CI01000001_02567315_02569427
CI01000001_02526729_02544932.mRNA mRNA upstream 112461 2526729 ~ 2544986 (+) True CI01000001_02526729_02544932
CI01000001_02666739_02671962.mRNA mRNA downstream 5868 2666469 ~ 2672408 (+) True CI01000001_02666739_02671962
CI01000001_02708472_02723568.mRNA mRNA downstream 47871 2708472 ~ 2724009 (+) True CI01000001_02708472_02723568
CI01000001_02740511_02753173.mRNA mRNA downstream 79910 2740511 ~ 2753580 (+) True CI01000001_02740511_02753173
CI01000001_02755511_02767404.mRNA mRNA downstream 94392 2754993 ~ 2767725 (+) True CI01000001_02755511_02767404
CI01000001_02787356_02792545.mRNA mRNA downstream 124723 2785324 ~ 2793251 (+) True CI01000001_02787356_02792545
TU15116 other upstream 986443 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 1612295 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 2165390 490574 ~ 492057 (+) True G12653
TU14066 other upstream 2173037 478386 ~ 478781 (+) True G12670
TU13987 other upstream 2346506 309144 ~ 310941 (+) True G12614
TU16602 other downstream 955647 3616248 ~ 3616411 (+) True G14846
TU17650 other downstream 2400617 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 2400617 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 2626148 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 3051284 5711885 ~ 5714951 (+) True G15995

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044868 True 1315 lncRNA 0.47 2 NC_007134.7 35489518 ~ 35498165 (+)
rainbow trout (Oncorhynchus mykiss) TU235490 True 268 lncRNA 0.46 1 NC_048566.1 95601605 ~ 95601872 (-)
rainbow trout (Oncorhynchus mykiss) TU378191 False 1826 lncRNA 0.44 1 NC_048568.1 23836050 ~ 23837875 (+)
tiger barb (Puntius tetrazona) TU235490 True 2427 lncRNA 0.46 1 NC_056721.1 18642262 ~ 18644688 (-)