RNA id: XM_043225454.1


Basic Information

Item Value
RNA id XM_043225454.1
length 2669
RNA type mRNA
GC content 0.40
exon number 15
gene id zgc:154075
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12229968 ~ 12235977 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGGGTAAACAAGGAAGTAATTAACAAAACAGTGAATGAACCGAGCTCTGCGTCTTTCGTGTAGCCTTCTCACGAGTAAAAACCTGTGTGTATACACGTACTCAAGCACTTATAGGGTCCTAACCGTTTTCAGGACCAAGATTAGTTATCGTGTAGTTTAAAGCGCACTGGGATTTCGTTAATGTTTAAGGTAATATGCGAGATGCTAGACTATGTACGAAATAGCCCAAATTAGCAGGAATCCGCTATAATGTCATCGCCTGTGGATGTTATCGTGGTTGGAGCTGGTAACAGAGGGGAAAACTATTCTGGCTATGCTGTGATTTTTCCTGACCGCATGCGGGTAGTGGGAATTGCTGACCCTAGGGATTTCGCTCGAAAGAAACTTCAGGCACATCACAAAGTATCCGATGAGAACACTTTCAGTGATTGGCATTGCATAGCAGAGCGGGAGAAATTTGCAGATGCGGTTTTAATCTGCACTCCTGATCGTCTTCATAAGGACCCTGCTGTGGCTTTAGCTAAGAAAGGCTACCATGTACTGCTGGAAAAACCAATGGCTGTTACCGAGGAGGACTGCACAGAGATTGTAGAGGCGTGCATTCAGAGTGGCGTCATGCTCGCAGTGTGTCACGTTCTCCGATACGATCCTGTCATCCACAGAATTAAAGGGCTGATTGACAGTGGAGTGATCGGGGACGTCATCCACATTCAACATCTGGAGCCGGTGGGGTTCTATCACTTTGCTCACTCCTTTGTCAGAGGGAACTGGAGAAACGAGGAAGAGAGCTCTTTTGCTCTGTTAGCCAAATCCTGCCATGATTTGGATCTGATTCATCACTGGGCTGCTGGACGAAGGTGTGTTAAAGTTTCGTCATTTGGGTCTCTTAGCCACTTCACAAAAAAGAACAAGCCAGCGAATGCTGCAGATCGCTGTTTGGACTGTCCTGTAGAGGGAGATTGTGCGTACTCTGCAAAGAAAATCTATTTGGATCAAGTGAAAAGAGGTGCTGTTGGCTGGCCAGTGTCAGTGATTTGCTCCAGCTCAGTTCCTGACATCGAGTCTGTGAGTGAAGCGCTCAGAACAGGACCTTACGGCCGCTGTGTGTACGAGTGTGACAATGACGTGTGCTCCAATCAGGTGGTGAACATGGAATTTGAGGGAGGCTTGACTGCTGCTTTCACTATGGTAGCATTTACAGAGGAAATATGTCTACGCAAAACTTCGATCCATGGTAGTAAGGGGGAACTGTCCTACGATGGATATGAAATCAAAGTGTTCGACTTCCTTACCAGAAAGACCACAAAATACACTGCAGATATGAGAGTTCCAGGTAAATTTGGTACTGGCGGTCACGGGGCAGCTGATTATCACCTTATCGACTCCTTCATCGCAGCTGTGAAGCACGAGGACCCGTCTCGGATTAGGTCAGGCCCTATGGAGACGTTAGCAAGTCACAAACTAGTGTTTGCAGCTGAACGCTCCCGTTTGGAAAACAAAGTTGTCTACTGTGAAGAGAGCCAATGAATGTGTATGCGAAAACTAaatctgcagtgttttttttttttttttttttttttttttgtatatttcacTACATCTTCACATCGTCTTTGAactcataattatatttttttaattattctgtgGTTTTCAAGATAGAAGAACTTTATCGAATGTGTTTTCTTAATATAATCATGTCTGTTTTATTCAGATGAATCATAAAACAGTAAATGTTGAATCATATTTATTGAGTTGTATGTAACCTaacgtttacattttaaatgtacctAGATCAAGTAGATCAAGTCTGGAATTATTAATTACCTAAATGAATTCTTTGAATTTTATCACCTTTTGTTCGGTTTAAAATAGATTAACTTTAATATTGCAAGTGCAAAAACATCCTGCATAATATAAAGTTGCTATTGCTACTATTTTTATTCTGTGACTTTGTCagcaaaaaacaagcaaaccgTTACATCATTGCCCATATAAGGTCTTTCCAGGAAAtaattatacttaatatatCAGCAAAATACCTCAAACAAGAGGCGGAGTAACTGTATTCTTATTACACAGCAATATATGTATTAGTAGTCATCAAAACTTGTATGTTTGCATACGCCTAGAAGACTACATTCCAGATCTTCAGctgtttaaattcataaaatagaTCAATTAATACTGATGGTGTGTGAGGAACCAAACCATTTAGCACCGCGttttaaaacagcagcaatGACAAATGACGACTGAAATATGCTACACGAAATGTAAACTTTGACAATGGTAATGAAATAGTCTAGCCTAAAGTTATGTAATAGCAATTTTTACATTAGtcactaaatgtaaatgacGTTTTAGAGTTGGGAGAGGTGGCTTGTCACAGTGAGCTGTTGGGTGTCACGACCTTGCCGTCCACGCTTGTTAGTTTGCTGGCTTTGTTACTGGAACAGAGCATTGTGTTTGACgacattaaaacaattatactacattttttaaggtaagtggttgcaagGTGATTTGATATCTTACCctaaaaaaatctcattttgaatgctaaaaaagaaacctttataaatgtctttattaacACCTGAACACCATGTACGTAAATTGgcacattaaatatgttttacaaaataataaactgttgtaaaataca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232392 lncRNA upstream 24573 12204256 ~ 12205395 (+) True G156931
TU232390 lncRNA upstream 24573 12204344 ~ 12205395 (+) False G156931
TU232394 lncRNA upstream 55053 12174530 ~ 12174915 (+) True G156933
XR_006247799.1 lncRNA upstream 195011 12030146 ~ 12034957 (+) False LOC122328486
TU232612 lncRNA downstream 3872 12239849 ~ 12241401 (+) True G157079
TU232614 lncRNA downstream 9897 12245874 ~ 12246101 (+) True G157081
TU232604 lncRNA downstream 10240 12246217 ~ 12251978 (+) False LOC122328708
TU232617 lncRNA downstream 117113 12353090 ~ 12386381 (+) False G157084
TU232620 lncRNA downstream 125496 12361473 ~ 12386381 (+) True G157084
XM_043224226.1 mRNA upstream 1641 12221793 ~ 12228327 (+) True ttc34
XM_043225469.1 mRNA upstream 9032 12213370 ~ 12220936 (+) False si:ch211-112c15.8
XM_043225471.1 mRNA upstream 9032 12213372 ~ 12220936 (+) True si:ch211-112c15.8
XM_043225169.1 mRNA upstream 25849 12188521 ~ 12204119 (+) False ccdc30
XM_043224564.1 mRNA downstream 10216 12246193 ~ 12251982 (+) True LOC122328708
XM_043224563.1 mRNA downstream 16748 12252725 ~ 12311254 (+) False pax7b
XM_043224558.1 mRNA downstream 25518 12261495 ~ 12311254 (+) True pax7b
XM_043224559.1 mRNA downstream 25518 12261495 ~ 12311254 (+) False pax7b
XM_043224560.1 mRNA downstream 25519 12261496 ~ 12311254 (+) False pax7b
unassigned_transcript_2622 other upstream 711432 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 714097 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 716122 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 717270 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1052935 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1818387 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1820708 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2063724 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2448013 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2476170 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile