RNA id: TCONS_00003015


Basic Information

Item Value
RNA id TCONS_00003015
length 3832
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_000043
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 2001716 ~ 2005632 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAATTTGCTGGCgttcatgtgttttcttaaactgcAGCATGTTAATCTCTCTCGGTCACTGTAGAAACTACACTCTCAGAGGAATAACTACTGAATCAGAGTCAACAGCCAGGATTAAATGCTCTGATATTGCACTAAAACCCATCATTATCAGCCAGGAAACATTTCTGTTGGATATAGGAACGTTTGGTAAGTCCAGAAATGTTCAATGAGAAACTGAAGGATTATTTTACACTACATCAAGCTCCAAAGAGACTGCTTCCAGATCAGGGTTAAAAACACTAGCTTATACCGTGATTCTTCTGAGTTTGGTGCTACTTTCCCCTTTGCGAGACATGGGAGGAGCTGAACCCACGTCACAATGTGAACGCTGATGTTTTATTTGTGATTTTGTGACTGTTCATTTCATCTGTATTTTGGGAACCGTTCGGTCTTGTTCTCCAATCCGTCCAGAGTTTACCAGCTCTGACTCAACTCTGGGCTTCTGAAAGCTAACTAGCCAACTGCTGTCAGCTGGTCAACTGTAATGCGACAGGGGTGGCCACACTAGATTGTCAGCTTATTAGATTAATTAGGACCTGGCAGAATATGTTTTATGAATGGATAGtattttgttaaatacattttacatctcATTGTTAAAACATggcatcttttcttttttaaagtgacAATACAACTACAATCTAGCTAACTAGCAAGACCCTCGAAACCACATTGCAACCAGagttgggtaaaaaaaatatatacgttACAATTTTAAGCCTATCTTGCGCTTAAAAAAACAccttttcttaaaaataaaataataaacagattTAGTTACTgtctttaacaaagtgacttaagattataatatattattatttcccaACACTGATTGCAACATATTAACAACTGCTTTTAAAGCTCCAGTCATTGATTAGCAAGTCTGTAGCAGCCACTTGAATGGTTACAGCTAACTGGCAGCAGCCTCGAAAACACTTTGAACATCATAGCAACAGCCAAAGCACCTTGGCAACCTCCTAGAAATACTACTACATTcacaaaaatatagacagcgtcctgtagtggatttgtcatttgaaatatACAACAAAACGTACAGTATATAAACGTACAAAACGTACGTACAAGTAACGTATTTcacattttacaaaaatgttgacagcgccctctagtggatttgtcatctgaaatataCTGCCAAACATACACCAAGTAACGTATTTTTTAATATGCAAAAATGTCagcagtgccctctagtggattagttATCTGAAATATACAACAAAACGTACACCAAGTATCGTATTTTACATTTGGAAAAAATCTTGACGGCACCCTCTAGTAGACAATAAAACAAACCCTAATGTAttgaaaattttcaaaaatgtcGACATCGCCCTCTAATGGACTTGTCATCTGAAATATACAACAAAACGTACactaagctatatattttctacatttacaaaaatgtcgACAGTGCCCTCTAATGGATTTGTCGTCTCAAATATATAATCAAACGCACACCAAGTAACGTATTTTACATTAAGCAAAAATGTTGACAGCACCCTttagtagatttgtcatctgaaatatataataaaacaaacccTAACGTATTTCAAGTTTTCAAAATTGTCGACAGTGCCTTCtaatggatttgtcatctgaaatataTAGCCAAACGtacgtattttacattttacaaaaatgtcgacagtgccctctagtagatttgtcatctgaaatgtacaaccaAACGTACACCAAGaaacgtattttacattttgctaaAATAACTAGTGCCCTCTAATGGATTTGTTGTCTGAAATATTCTGCCAAACGTACATcaagtaatgtattttataatatgCAAAAGTGTCggcagtgccctctagtggtttTGTTATctgaaatatacaacaaaatgtacacCAAGTAACGCATTTTACTTTTTGCAAAAATGTCGACAGTGCCCTCTAGTAAATTTATCTTGTGAAATATACAACCAAACGTACAGCAAGTAACGTATTTTACAATTCAAAAAAATGTCGCCTGCGCCTTCTgatggatttgtcatctgaaatccgcttgttaagtggtgacgtgtttttgacgtatgtaatactgtttccgggtccaagccgctcttcatttgagttgagaaatcattcgtttatgatcactttttattcatatcacacactaaagttaattttatataaagtcatagtgtacacaacaatctctgggcttgctgcatcacaaataccaaaatttgaacaatttataaaaaaatgaatcactttctggccattggatattaggcatggacatatatattgcgattgtgattttcgaaagtattaaatcgctttgtaaacgtttattattaccatattATTACCATAGTCTCCCCTTTCAGTTGAATAGaacgcttggacctggaagccgcttcgcgtgacgtcacacttaacaagcagatatacAACAATACGTTTCAATAAGTAACATATTTTACAATTAGCAAAAATGTCGATAGCACCCTCTAGTGGTTGTGTTAACTGAAATATACAACTAAATATACACCaagtaatgtattttacattttgcaaaaatttagacagcgccctctagtggatttgttttaTAAAACGTAAAACAAGacacaccctaagtaacgtatttcagctttggaaaaatgtaaacagcgccttccagtggatttgtcatctgaaagatACAATGAAACGTATCTAAAGCAACATATTTTACGTTTCGCAATAATATAAGCTAAGGCAAGTATTTCTAACCAGTCTGActtgcaatatatatattgtgcatcccttaCACAAATATGAATGAAGGTTACATGATGAAGGTCTAGTGTGGCTGCTCCTCAAGAAGACATAATATTGACCCAGTGACTCCTGAAGACGGGTCAAATGAAGTCATACAGAAGTCAGGGTTTTGCTTCGGTTGAATCTGTGCCTTGGGCCTGGTCTTGAAGCTCCACTACAAACTCATTCAGAAGCTCCAGCGCTGCTTCACGGAGCAAGTAGAGCTGAAATTAGTGCATTAGGGGCCAAAAGACCCTCAAAATGAGCACTCTCGTCTCCAGTGAGGCCTCAGGGGCATCGGCTGACCTTCTTCTTCTTTGTCTGTTTTTGAAGATCTTTGTCTCACTCCTGAAGCTATCGTCTGTCTGCGCTGGGATGAAAAAAACCCATTGAATCTCCCATATGGATATTGACAGTGTTTGTGCTCGGCAAACATTCTGGATTGGGTTTAttctccagctctttttcttcagTATTAGATGTTTGACATTAATTCAGCGCTAAAAATGCATACAGACTTGTAAAATCCTTTCGGTCTTCAGAAGTGCTTCGGGTTTTATAAACTTTAtctctttgtttttattattaatttttaaaagatattGAAGTTTGAGGCTGTCTTTGACATTGTTTGAATGTGAAGTTGAAATGTTGTTGATGTCATCATGCAAACTAAATTgcgatgtttgtgtgtttgcatacTGAACACTACGagtatgatatgatatgatacaaTAGAAAGATGGAGTGAGCAACTGCTTAAAGAATGGTCTAGATAATAATAAGCATGCTAAATGAGTTGTTTTAGAAGGAACATGGACAGCAGGATGTGATGTCATAGTCCAGCTCTATTGTTTTAAGaggtaataaattataaataataataaatttaatatgttttaatatcaTCTGTTGGAGTTTGCACACtgaattgtgatttttattttgtttattgttattttttggcttggtttggtttgt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0040011 locomotion biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0061564 axon development biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0005588 collagen type V trimer cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000077 lncRNA upstream 101873 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00000073 lncRNA upstream 209193 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 270232 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000065 lncRNA upstream 295836 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000064 lncRNA upstream 310691 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00002808 lncRNA downstream 17777 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00000101 lncRNA downstream 290959 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1713034 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000113 lncRNA downstream 2592428 4598060 ~ 4680477 (+) True XLOC_000056
TCONS_00002809 lncRNA downstream 2895828 4901460 ~ 5030155 (+) True XLOC_000057
TCONS_00000080 mRNA upstream 1359 1941031 ~ 2000357 (+) True XLOC_000042
TCONS_00000079 mRNA upstream 78463 1915967 ~ 1923253 (+) True XLOC_000041
TCONS_00000078 mRNA upstream 90335 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000076 mRNA upstream 101868 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000075 mRNA upstream 151612 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000081 mRNA downstream 19453 2025085 ~ 2027100 (+) True XLOC_000045
TCONS_00000082 mRNA downstream 95909 2101541 ~ 2129631 (+) False XLOC_000046
TCONS_00000086 mRNA downstream 95909 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000085 mRNA downstream 95909 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000084 mRNA downstream 95909 2101541 ~ 2216362 (+) False XLOC_000046
TCONS_00000069 other upstream 208345 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 269390 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 278559 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 283189 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 426153 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000094 other downstream 185068 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000098 other downstream 266629 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 269973 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 281217 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 296326 2301958 ~ 2302623 (+) False XLOC_000050

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU464075 True 4094 lncRNA 0.40 2 CI01000299 132613 ~ 136933 (-)