RNA id: XM_043234688.1


Basic Information

Item Value
RNA id XM_043234688.1
length 391
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122341335
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19998493 ~ 19999588 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTGAATTGTCCCTGATGCATTCACGCATGAATGGGGAGGTGAAACATTCACAATCTTCTCAGGAGAAAGACGTGTATCAGCTGGAGGTAAATCTCAGAGTAAAGGAATCGGAGATTAAGTGTCTAAAACAGGAGATCAACTCACTTAAACTGGAACTGCAGGCGGGAAATATGtattttaaagaaCTAAACTCTGAGCTGGTTGCTTCAGAAGTCAAAACTCAAAGTGACTTAAATAAACTAAGGATGGCGCCAGCAAGACAACACAGTTTAAAATACGATCTGATGAAATCCAGGAGCAACCCAGACTTCCCAAAGGACCATGCTACTCTTACGCAGACCGTCAGATCCAAGAGTCTTAAGATGGACTCACAGTTCAGGAGAGGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32026 lncRNA upstream 28074 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 46562 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 46859 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 87810 19903586 ~ 19910683 (+) True G21554
TU32018 lncRNA upstream 92840 19881382 ~ 19905653 (+) False G21554
TU32079 lncRNA downstream 65372 20064960 ~ 20065876 (+) False LOC122341338
XR_006250469.1 lncRNA downstream 160848 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 160848 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 169048 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 174106 20173694 ~ 20185526 (+) True LOC122342124
XM_043234687.1 mRNA upstream 21 19987506 ~ 19998472 (+) True LOC122341334
XM_043233554.1 mRNA upstream 56913 19930733 ~ 19941580 (+) True pold1
XM_043233601.1 mRNA upstream 77222 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA upstream 77222 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA upstream 77222 19918209 ~ 19921271 (+) True aspdh
XM_043234998.1 mRNA downstream 10545 20010133 ~ 20021740 (+) True LOC122341548
XM_043234689.1 mRNA downstream 64682 20064270 ~ 20069253 (+) True LOC122341338
XM_043234690.1 mRNA downstream 72356 20071944 ~ 20077001 (+) True LOC122341339
XM_043234691.1 mRNA downstream 77414 20077002 ~ 20082045 (+) True LOC122341340
XM_043234997.1 mRNA downstream 95263 20094851 ~ 20113498 (+) True LOC122341546
TU31603 other upstream 595317 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 595317 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 595317 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 706152 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 1005296 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 64902 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 66542 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 107258 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 185979 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 187940 20187528 ~ 20188083 (+) False eftud2

Expression Profile