RNA id: XM_043235228.1


Basic Information

Item Value
RNA id XM_043235228.1
length 1889
RNA type mRNA
GC content 0.53
exon number 12
gene id znf207a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13163996 ~ 13170254 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGTCGTCATGTCCTATTTACTCCATTTTAGGTTTGCTAATGTTTTGGTAAGCGTCGGTGTGCTGCTCGCGGAATAGGCTGGTAAATAAATCATggggagaaaaaagaagaagcagatGAAGCCCTGGTGTTGGTACTGTAACAGGGATTTTGATGATGAAAAGATTCTCATTCAGCATCAGAAGGCCAAGCACTTTAAGTGTCACATATGTCACAAGAAGTTATATACTGGTCCTGGACTGGCCATCCACTGTATGCAGgTTCACAAAGAAACCATTGATGGTGTCCCTAATGCAATACCGGGAAGAACTGACATTGAACTAGAGATCTATGGAATGGAGGGTATTCCAGAGAAAGACATGGAGGAGAGGAGACGTGTTCTTGAACAAAAAACACAGGaaaaacagaaaaaacagcaGGATGACTCCGATGAAGATGATGAGGACGAAGAGGCTGGTCCCTCCTTCCAGCAGCCAGCAACAACCATACAGCCTCAGGCAGCCTATGCCCCTATGACCCAGCCAGGAATGGCCCCTGTCCCAACGCCAGGGATGCCACCTGGAAGCTACTCAGGAATGCCCCCAATGATGCCTGGTGTCCCACCTATGATGCCAGGAATGCCTCCTGTCATGCCCGGGATGCCTCCAGGCATGATGCCAATGAGTGGGATGATGCCGCCTACACATGGAATGCCCCCAATGATGCCAGGCATGCCACCAGgaaTACCTCCTCCAATGGGCCATCACCCTGGTATACCCCACATGGCTCAGGCCCCTCCTGCCGCCCGGCCGGCTGTGCCTGTTACAACCGTGCCCACTCCACAGCCAAGTGTTTCCAAGCCTCTGTTTCCCAGCGCAGGACAGATGGGGACTCGAGCTCCAAGCACAAGCTCAGGCTCCTCCAGTCTGGACAGTTTGTCAGCATCCTCTAAACCGCTGTCCCAAGTTCAGCAGGCTGCTTCTGGTGTAGCGGTGAGCTCCTCTGCACCACCTTCTGCTGCTCCCAAACCAACATTCCCAGCATACACCCAGTCCTCGGCCACCGCTGCGGCCAACACCAGCAGCGCTGTGGCCAAACCGGGCACCCCAGTCACAAGTAAGCCTGCCACCCTCACCACCACCAGTGCAACCAGTAAGTTGATCCACCCTGATGAAGATATATCACTGGAGGAGCTGCGAGCCCAGCTGCCTCGTTACCAGTGTAAAGTCCCCAGTGCAGGACAAGCCCACGTGACTTCCCCACCGGGTGCACCGATGGGGGGGGTGTTGCCCCCTCAGCAGGGCATTCCTGCACAGCAGCCAGGTGTTAGGCATCCCATGCAAGGGCCATTCGGTGCTCCGCCGCAAGGAGTGCCCGGATACGTCCCAGGAGGAATGCCTCCTTACGGACAAGCCCCACCCATGGTCCCTCCCTACCAGGCCGCTCCCCCTCGGCCCGCCATTGGCATGAGACCTCCTGTAATGTCTCCTGGAGGCCGATATTGAAGCGCCACCACTGGTCTTCATTAGgtttttaGAAGTGAAGTGTAGTAAATATGGTTCGTATTAATTTGAAGCGGCTGGAGTTTCGTACAGCACCTTTAACAAGGCAAGTCACTGTAAATATACTACTGTACTAAAAGTGTGAAGCCTTCGCAGCACCCATAGGTGCTGTTGGACGTCCCGTCCCCAGCGTTGCTTGGTGAGGGCTTCAGATAGCTGTCACTGttggatttatttttctatgtctGCTTGTCTACATTTACAGTGTTCTCTCTGTAGGGCCAATAACAAAGACTCCTGTGAATGCTATCTGTACTGTTCCACTGTTAATTGTAATAAACTATTGAAATCTAACGGCTGCTTTTTCATTAGCGAGTAAAGGACAACCTCACAAGGTTTGTACTACA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248092.1 lncRNA upstream 11677 13140282 ~ 13152319 (+) True LOC122330830
TU29256 lncRNA upstream 49147 13112520 ~ 13114849 (+) False si:dkey-204f11.64
TU29201 lncRNA upstream 71356 13088254 ~ 13092640 (+) True G19626
TU29203 lncRNA upstream 81842 13077933 ~ 13082154 (+) True G19628
TU29199 lncRNA upstream 87302 13072133 ~ 13076694 (+) True G19624
XR_006250467.1 lncRNA downstream 1785 13172039 ~ 13173224 (+) True LOC122341519
TU29398 lncRNA downstream 56305 13226559 ~ 13227185 (+) True G19722
TU29447 lncRNA downstream 174241 13344495 ~ 13351575 (+) True G19757
TU29446 lncRNA downstream 185962 13356216 ~ 13357051 (+) True G19756
TU29467 lncRNA downstream 187459 13357713 ~ 13358408 (+) True G19775
XM_043229861.1 mRNA upstream 1689 13154507 ~ 13162307 (+) True slc25a23b
XM_043229869.1 mRNA upstream 1689 13154507 ~ 13162307 (+) False slc25a23b
XM_043234775.1 mRNA upstream 27246 13134670 ~ 13136750 (+) False timm29
XM_043234776.1 mRNA upstream 27246 13134880 ~ 13136750 (+) True timm29
XM_043234771.1 mRNA upstream 34388 13116033 ~ 13129608 (+) True carm1
XM_043230480.1 mRNA downstream 216174 13386428 ~ 13391506 (+) True dlx4a
XM_043235109.1 mRNA downstream 221719 13391973 ~ 13394963 (+) True dusp3b
XM_043235110.1 mRNA downstream 221719 13391973 ~ 13394963 (+) False dusp3b
XM_043235288.1 mRNA downstream 291798 13462052 ~ 13468151 (+) True cdk5r1a
XM_043235269.1 mRNA downstream 303254 13473508 ~ 13501419 (+) True itga3a
TU29192 other upstream 176083 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 275935 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 635193 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 650275 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 650275 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 528320 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 743369 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 879236 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 948213 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1085236 14255490 ~ 14267791 (+) False abcc1

Expression Profile