RNA id: TU29446


Basic Information

Item Value
RNA id TU29446
length 836
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G19756
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13356216 ~ 13357051 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCACTATTCAACCCCCAGTCGCATCTTTGCAATTGCGTAAACTAAGTTAGCTACCAGActcaaaacattatatatattattacgtATTATATGcttttacatgtaaatgcattgtgacgggaggagccaacgacagacacagtgggcgtggcgtcgggcctcggagaggctttttattaacagaaaaggtacaccagcgtgcatgcacgggggaagagaccggtctcccgaggagaggcgcgctcgGCGGTGACGAGGTTCAATTCACTTCAgctgtgcctcgtcacacgccgccagacctgaccaataccacgcccctcctctcagacacgcccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatgatgacaataaaggggaggggcagccgactcgtcacagtatatatatatcgctattaagttagttttttcttgtccaaaacaaatacatgtcaGGTGAAATCATTTATAAACCATATATGTTCTGTTAATTCACTCAGTTTGAGCATTAACGCACATGCTTCAGATTTTTATATGACAGACACATAGCTTTACTTTAATGAAGTGAAATGAGACATGTTATGAAATACGTTGATGAATGTTAATATACTTGCAGAAAACACTACCGACTGCTGGAAATCACGGCCCCCAAAATCTGGAAACTAAATTCAAAGAAACCGTGTAAGAGTGCAAAATCATTTAAGCGTGCTGCAATTTTACCGCTGGACTACTCACGTGACTCATGTGTGTGTAACCATTAGCATTTCCTGAAAGTCTGCAAGAACAGTTGAGAGCAACGTCTCGCGCTTCTG

Function

GO:

id name namespace
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29447 lncRNA upstream 4641 13344495 ~ 13351575 (+) True G19757
TU29398 lncRNA upstream 129031 13226559 ~ 13227185 (+) True G19722
TU29387 lncRNA upstream 141401 13120633 ~ 13214815 (+) True G19711
XR_006250467.1 lncRNA upstream 182992 13172039 ~ 13173224 (+) True LOC122341519
XR_006248092.1 lncRNA upstream 203897 13140282 ~ 13152319 (+) True LOC122330830
TU29467 lncRNA downstream 662 13357713 ~ 13358408 (+) True G19775
TU29468 lncRNA downstream 1450 13358501 ~ 13359045 (+) True G19776
TU29469 lncRNA downstream 1596 13358647 ~ 13359045 (+) False G19776
TU29470 lncRNA downstream 2268 13359319 ~ 13360335 (+) True G19777
TU29473 lncRNA downstream 5835 13362886 ~ 13363730 (+) True G19780
XM_043235227.1 mRNA upstream 185962 13163996 ~ 13170254 (+) True znf207a
XM_043235228.1 mRNA upstream 185962 13163996 ~ 13170254 (+) False znf207a
XM_043235229.1 mRNA upstream 185962 13163996 ~ 13170254 (+) False znf207a
XM_043229861.1 mRNA upstream 193909 13154507 ~ 13162307 (+) True slc25a23b
XM_043230480.1 mRNA downstream 29377 13386428 ~ 13391506 (+) True dlx4a
XM_043235109.1 mRNA downstream 34922 13391973 ~ 13394963 (+) True dusp3b
XM_043235110.1 mRNA downstream 34922 13391973 ~ 13394963 (+) False dusp3b
XM_043235288.1 mRNA downstream 105001 13462052 ~ 13468151 (+) True cdk5r1a
XM_043235269.1 mRNA downstream 116457 13473508 ~ 13501419 (+) True itga3a
TU29192 other upstream 368303 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 468155 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 827413 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 842495 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 842495 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 341523 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 556572 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 692439 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 761416 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 898439 14255490 ~ 14267791 (+) False abcc1

Expression Profile