RNA id: TU29387


Basic Information

Item Value
RNA id TU29387
length 1033
lncRNA type read_through
GC content 0.36
exon number 3
gene id G19711
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13120633 ~ 13214815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttttttttttttttTTACAGCCaagaacaaaaatgcaatttattaattgtttgaaagaaGCTCCAtagttcaaaacatttttttcggTGCATGTCAACAATCACATTCTatgaggagagaaaaagagagaaagagagagaaaacaaaaacattaaaagccaCTGACTTCTTAAAATCTCAGTACAGACATATTccttaacatttaaaatcaaaaggcAAAAGCAACCCAGTATCTCCATCCACATGTATCCCAGTAACACACACTCAgtcgcgcacgcacgcacacacacacacacacacgcagaacaGAACACAGACAACCTTGAAAGTCATGGgctacaaaaaaacccccacagtGCTTCAGAATGAGACGTTCATTGGTTTAGGAATACACAGCATGGCGATGTACTGTATGtaagaaacatgaaaaatgggAAATAAGATGGGGTCGGTGGGGGAGAGAGACGACAGAGCAAATGAGCACAATAAAAAGACACAGAAAGAATCCCTCTAATCCCAATGAGAGATGGGTCACAGAGGCTTTAAGAAGCCCACCCCCTTGTGCATAGATCATGATCCGTATAAACCAgctttttgttttcctctttaaaTCGATCAATTTGATACAGAAACCCTCACCCCCCAACCCCTCTTTTTAAATTTCTCATTATGTAATACCCGCCACAAGAGACAGAATGACAAAGAGGAAAGAAATAGTAATGCACAATGGTCCTGATTTCAACAGGAAGGGACCTCATGttaagaaaatacaataaagattCAAACATACAGCATCTGTATGTTCTTTCACCGTCTTTTGAACAATCAAAATCATtgatcattttgtttaaaatgtaaagcaatttcaatatatagatttatatataaagcactccatttttttaaagttcattaagagtTCATTATTTGGTAAATATGTAACTGCTACGGATTTAGAAACAAAGgtattttcttcttctgaaaTCCATAACCTTCAgtgcttatgtttttttttttttttgttttttt

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29256 lncRNA upstream 5784 13112520 ~ 13114849 (+) False si:dkey-204f11.64
TU29204 lncRNA upstream 23779 13005810 ~ 13096854 (+) True G19629
TU29201 lncRNA upstream 27993 13088254 ~ 13092640 (+) True G19626
TU29203 lncRNA upstream 38479 13077933 ~ 13082154 (+) True G19628
TU29199 lncRNA upstream 43939 13072133 ~ 13076694 (+) True G19624
TU29398 lncRNA downstream 11744 13226559 ~ 13227185 (+) True G19722
TU29447 lncRNA downstream 129680 13344495 ~ 13351575 (+) True G19757
TU29446 lncRNA downstream 141401 13356216 ~ 13357051 (+) True G19756
TU29467 lncRNA downstream 142898 13357713 ~ 13358408 (+) True G19775
TU29468 lncRNA downstream 143686 13358501 ~ 13359045 (+) True G19776
XM_043234628.1 mRNA upstream 5777 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234624.1 mRNA upstream 12786 13103276 ~ 13107847 (+) True aldh3b1
XM_043229415.1 mRNA upstream 146006 12972477 ~ 12974627 (+) True LOC122332118
XM_043229474.1 mRNA upstream 220417 12895326 ~ 12900216 (+) True LOC122332168
XM_043235716.1 mRNA upstream 348451 12770572 ~ 12772182 (+) True alkbh7
XM_043230480.1 mRNA downstream 171613 13386428 ~ 13391506 (+) True dlx4a
XM_043235109.1 mRNA downstream 177158 13391973 ~ 13394963 (+) True dusp3b
XM_043235110.1 mRNA downstream 177158 13391973 ~ 13394963 (+) False dusp3b
XM_043235288.1 mRNA downstream 247237 13462052 ~ 13468151 (+) True cdk5r1a
XM_043235269.1 mRNA downstream 258693 13473508 ~ 13501419 (+) True itga3a
TU29192 other upstream 132720 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 232572 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 591830 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 606912 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 606912 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 483759 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 698808 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 834675 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 903652 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1040675 14255490 ~ 14267791 (+) False abcc1

Expression Profile