RNA id: XM_043229415.1


Basic Information

Item Value
RNA id XM_043229415.1
length 1247
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC122332118
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12972477 ~ 12974627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAAATGGCGCCCTGTCAATGACAGTAATGACACTAGTAAGCTGAATATTGTGGATCTTTAAGTGCCATCGTATGTCCTCGACAAAATGACACTGCTAATTAGAGTATCGAAACAAGGACAGAGGAAAGCTTTCCATAATCCCTTACTGTATAGGTTTTTATCGGAGAGCACGGATTTACGAAAAGGCCCCGAGAGCAAAGAGGGCTGTAGTTGGTTGTACGGATCGTCGCAGGAAATTTTATCCGTAGTGCGTGGGCATGTTGAAGTTAGACATAATTTCATCAGCGAGGAAGAGGAGAATGCCCTTTTCAAAGAAGTGGAGACAGGACTTAGAAAAAAACGATACGAGTTTGACCACTGGGACGACGCTATTCATGGCTACAGGGAAACAGAGCGGCTGCAGTGGGGACTTAAGTGTGAAAGTATCCTAAAGCGGGTGAGAGAGGTAGCTTTTCCTGAAGGCAGTCCACTGCTTGGGCCAATTCATGTTCTGGACCTGGACAGAGAGGGCTATATCAAACCTCATATCGACAGTGTGAAGTTCTGTGGAAGCACTATTGCAGGACTGAGCCTTTTGTCCGATAGTGTGATGCGATTGGTCCCGGAAAACAAATCCACAGACTGGGTGGACTTGCTTCTGAGTCGGCGCtcactttatatattaaaGGATGACGCTCGATTTAAATTCACCCATGAAATCCTGAAAGAAGAAGAATCCTTTTTCTCAGGACGGAAGGTACCACGGCATCGCCGCATCTCTGTCATCTGCCGAAACCTGCCTGTTTAAAAGAACTGGACTGACCTTAGAACTCGTCTTCTAAAAGCTGTGACTTTTATGAGAATTGTTTATCTTTCAGTTAatcacacacaccaacacacacaaagtaGCTAAAAACGTATAAATCACATGCATTTTCTTGGAATACCTACAAAGAAACAACTGCTGAAAAACTTGAAATGGTGTGTTGGATTTATGAAAGGCAAAGTTTTGACTGATGCAatgcataatgtaaaataagtcAGGGAAAAGAATGTCTTTACaacaggggtgtcaaactcaattcctgttTAGgaagtttagattcaacccggctaaaacacatatactgtgtaagtctgaagtacttgattagctggatcaggtgtgtttaaataGGGTTGCATCTCAACTTTGCAGGGCTACGGCCCTCCaggagtttgacacccctgctttACAATgtctattaataaatatttttttgctat

Function

GO: NA

KEGG:

id description
K10769 ALKBH7; alkylated DNA repair protein alkB homolog 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29141 lncRNA upstream 286106 12682818 ~ 12686371 (+) True G19575
TU29145 lncRNA upstream 290912 12681258 ~ 12681565 (+) True G19579
TU28784 lncRNA upstream 458756 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 458756 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 722480 12246208 ~ 12249997 (+) False LOC122341822
TU29234 lncRNA downstream 22590 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 31183 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 85533 13060160 ~ 13061606 (+) True G19627
TU29211 lncRNA downstream 86490 13061117 ~ 13072599 (+) True G19636
TU29199 lncRNA downstream 97506 13072133 ~ 13076694 (+) True G19624
XM_043229474.1 mRNA upstream 72261 12895326 ~ 12900216 (+) True LOC122332168
XM_043235716.1 mRNA upstream 200295 12770572 ~ 12772182 (+) True alkbh7
XM_043228192.1 mRNA upstream 292720 12678396 ~ 12679757 (+) True ier2a
XM_043225918.1 mRNA upstream 295814 12662286 ~ 12676663 (+) False LOC122329583
XM_043234624.1 mRNA downstream 128649 13103276 ~ 13107847 (+) True aldh3b1
XM_043234628.1 mRNA downstream 137850 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234772.1 mRNA downstream 141404 13116031 ~ 13129608 (+) False carm1
XM_043234771.1 mRNA downstream 141406 13116033 ~ 13129608 (+) True carm1
XM_043234775.1 mRNA downstream 160043 13134670 ~ 13136750 (+) False timm29
unassigned_transcript_277 other upstream 84416 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 443674 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 458756 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 458756 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 659487 12303364 ~ 12312990 (+) False nbr1b
TU29613 other downstream 723947 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 938996 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1074863 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 1143840 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1280863 14255490 ~ 14267791 (+) False abcc1

Expression Profile