RNA id: TU29234


Basic Information

Item Value
RNA id TU29234
length 398
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G19656
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12997217 ~ 13056733 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCCACCCCCTGTGTCTGTCGAGCACAGTAATATACAGCAGAGTCCTCTTCTCTCAGACGTTCAGCTTGAAGATACTGAATACTTTGAGACACATCCTCACTCATAGTGAAGTGATTTTTCATGGAGTCTGCATAAATAAGATAATTAGAGCTAGAACTACTGCCAGAGTTAACTCTCCCAATCCACTCCAGAGCTTTCCCTGGTTTCTGTCGTATCCAGTGCATGTAGTAGCTTGTCATTGTAAAACCAGATATTTTACAGGAGATCTTCACTGTTTCTCCAAGTTTCTTTATCTCAGCAGATGACTGATCCAACCGGATTTCATCACCACTGATACCTGTGgaacaggaataaataaattacactgatgaatatttatttgcttatatagtgccg

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29141 lncRNA upstream 310846 12682818 ~ 12686371 (+) True G19575
TU29145 lncRNA upstream 315652 12681258 ~ 12681565 (+) True G19579
TU28784 lncRNA upstream 483496 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 483496 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 747220 12246208 ~ 12249997 (+) False LOC122341822
TU29202 lncRNA downstream 3427 13060160 ~ 13061606 (+) True G19627
TU29211 lncRNA downstream 4384 13061117 ~ 13072599 (+) True G19636
TU29199 lncRNA downstream 15400 13072133 ~ 13076694 (+) True G19624
TU29203 lncRNA downstream 21200 13077933 ~ 13082154 (+) True G19628
TU29201 lncRNA downstream 31521 13088254 ~ 13092640 (+) True G19626
XM_043229415.1 mRNA upstream 22590 12972477 ~ 12974627 (+) True LOC122332118
XM_043229474.1 mRNA upstream 97001 12895326 ~ 12900216 (+) True LOC122332168
XM_043235716.1 mRNA upstream 225035 12770572 ~ 12772182 (+) True alkbh7
XM_043228192.1 mRNA upstream 317460 12678396 ~ 12679757 (+) True ier2a
XM_043225909.1 mRNA upstream 320554 12661681 ~ 12676663 (+) False LOC122329583
XM_043234624.1 mRNA downstream 46543 13103276 ~ 13107847 (+) True aldh3b1
XM_043234628.1 mRNA downstream 55744 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234772.1 mRNA downstream 59298 13116031 ~ 13129608 (+) False carm1
XM_043234771.1 mRNA downstream 59300 13116033 ~ 13129608 (+) True carm1
XM_043234775.1 mRNA downstream 77937 13134670 ~ 13136750 (+) False timm29
TU29192 other upstream 9304 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 109156 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 468414 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 483496 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 483496 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 641841 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 856890 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 992757 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 1061734 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1198757 14255490 ~ 14267791 (+) False abcc1

Expression Profile