RNA id: TU28700


Basic Information

Item Value
RNA id TU28700
length 1554
lncRNA type sense_over
GC content 0.47
exon number 7
gene id LOC122341822
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12232427 ~ 12249997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCAGACACAGCATtacaaaaagatgttttattcaCAGTTTGTGTCTTTTTATTGGTTACAGAAGAGTTTCTGACAGAGCAAAGCAAGCCCAGATGCAGAAAGCAGgggtagataaaaaaaaaaaacatggacagAGAAATAGTGAAGAGGAGGGGAGAGAGGGAGTGAAGAGGATATGTTTTCTTTCAGTCCCCGCTTTCCTCTCTTCCTTGGTtggtctgtctctctcactccctcTGTGATGAGCTTGGCTTCACTTTTAGGAGGCCAAGCTCTCTCTGTACAAAAccctcattttctctttctttttagtcAACTATCAGGGGAAAGAGCAAGAATGATGACTGGTTCCTCTATTATAGAGTGAGATCACTCCATCTTGCCTCTTTTTCCCTCAGATTGAGCACACCTCCACATTTATCTAGAGAGAGGTTTCAGCCAAAATCTGTAGATACCCTCAAGACAGCAGCAGAAGATGCAGCACTTTTCATGCATGAGAGGTGGTCGTGGGTGATGagtgagaaacagagagaaagagagaatgtgAAAGATACAGAAAGGATGTTCACTTTATTGAAAACAATCCCATATCCCCACTTGACAGACACCGTGGTCATGAACCTCTCCTCCCTCCCAATTCAGCCTCGGCGAGACCAGTCTTTGGAGAGACAAAGAGAGTAAGTGCTTGAGAGTAACAAAGATGATAGAAAGGAGGAAAGGGAGGAAGAAACACAAAGTAAGAGAAGGAGGACAGAGAACAGACTGGGAGAGTTAAGCAGTGAGGGATGCACGTTCATCTCTTCATTTTCTGTCTTGTCTCCACGACCGTTTactcctccttctcctctccGTGTGTGATGACGTAGCAGATGTTCTTGTAGTCAACATTGCCAGCAACATCTGGGGGGAAGGCGGCCCACAGATTCTTCATTCCTCTGCGGAGAACCTGTCGCACTGAGTGGTCAGAAGCTCATCAAGGCTAAATTGCTTCTTGATGAAGCCAGTGCCCTCTGGGTCCAGCACCTTGAAGGCAGACACAATGACGTCTTCGGGGTCAGCACCTTCAGCTTCTCTCCGAACATGGTGAGGAAAACGGTGAAGTTGATTGGGCCGCTGGCTTCCTTGATCATGGCCTCCAGCTCCTCATTCTTCACGTTCAGCTGGCCTAtgAGGCCAACACGTCCCTAAGGTCGTCTTTGCTGATGATACCGTCTCTGTTCTGGTCAATGATTGTGAAAGCCTTTTGTACTCCTGAATCTGGCTCTGCTCAAACATGGAGAACACGTTGGAGGAAccctctcctcctcctgccCTCCTCTTGGCCTTCTTGGCACCATGCTGAGACGGTATGTGTGAAGTCTAAGAAGCTCAAGAAGTGAAGACTGAAGCCGCGTGGTGACTTGTTTCTGGGGGGCTTATATACTGCCGAAGGCCCTTTGCTAATTATAGATCCAGCCTTAAGTGTGGCTTGGGAAAAAGACAGAGGGAAGAAATAGAGGCAGGGAAAACTATGAAAGGGGAGAGAGATGAGGTAGGGGTAAAGCGATGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28736 lncRNA upstream 17688 12227935 ~ 12228520 (+) True G19287
TU28710 lncRNA upstream 111251 12132629 ~ 12134957 (+) True G19274
TU28698 lncRNA upstream 127433 12118538 ~ 12118775 (+) True G19263
TU28697 lncRNA upstream 128299 12117343 ~ 12117909 (+) False pax10
TU28687 lncRNA upstream 171705 12074231 ~ 12074503 (+) True G19257
TU28784 lncRNA downstream 261929 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA downstream 261929 12511926 ~ 12513721 (+) False G19326
TU29145 lncRNA downstream 431261 12681258 ~ 12681565 (+) True G19579
TU29141 lncRNA downstream 432821 12682818 ~ 12686371 (+) True G19575
TU29234 lncRNA downstream 747220 12997217 ~ 13056733 (+) True G19656
XM_043234932.1 mRNA upstream 15829 12216611 ~ 12230379 (+) True hsd3b7
XM_043233706.1 mRNA upstream 30518 12193978 ~ 12215690 (+) True setd1a
XM_043235340.1 mRNA upstream 54065 12183251 ~ 12192143 (+) True fus
XM_043234668.1 mRNA upstream 63710 12179223 ~ 12182498 (+) True si:dkey-16l2.17
XM_043234060.1 mRNA upstream 68479 12174276 ~ 12177729 (+) True kat8
XM_043235469.1 mRNA downstream 3861 12253858 ~ 12259180 (+) True cd2bp2
XM_043235470.1 mRNA downstream 5911 12255908 ~ 12259180 (+) False cd2bp2
XM_043235471.1 mRNA downstream 6078 12256075 ~ 12259180 (+) False cd2bp2
XM_043234610.1 mRNA downstream 9479 12259476 ~ 12268093 (+) True prr14
XM_043228708.1 mRNA downstream 22643 12272640 ~ 12276359 (+) True rusf1
TU28690 other upstream 145356 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 412284 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other upstream 412284 11773201 ~ 11833924 (+) False kcnc3a
XR_006249729.1 other upstream 412284 11773201 ~ 11833924 (+) False kcnc3a
TU28236 other upstream 876456 11368893 ~ 11369752 (+) True G18949
XR_006249244.1 other downstream 53367 12303364 ~ 12312990 (+) False nbr1b
TU28786 other downstream 261929 12511926 ~ 12513721 (+) False G19326
TU28787 other downstream 261929 12511926 ~ 12513721 (+) False G19326
XR_006250478.1 other downstream 269840 12519837 ~ 12528803 (+) False gtpbp1
TU29192 other downstream 585384 12835381 ~ 12987913 (+) True LOC122332158

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051612 True 1471 mRNA 0.48 7 NC_007114.7 32813048 ~ 32818607 (-)
grasscarp (Ctenopharyngodon idella) TU311582 True 1799 TUCP 0.46 5 CI01000069 4129128 ~ 4133378 (+)