RNA id: TU311582


Basic Information

Item Value
RNA id TU311582
length 1799
RNA type TUCP
GC content 0.46
exon number 5
gene id G274619
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4129128 ~ 4133378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCAGTACAAAAAGATGTTTTATTCACAGTTTGTGTCTTTTATTGGTTACAGAAGAGTTTCTGACAGAGCAAAGCAGGCCCAGATGCAGAAAGCAAAAGGGTAGATTAAAAAAAAAAAAAAACATGGACAGAAAGATAGTGAAGAGGAGGGGAGAGGGGGAGTGAAGAGGATATGTTTTCTTTCAGTCCCCGCTCTCCTCTCTTCCTTGGATGGTCTGTCTCTCTCACTCCCTCTGTGATGAGCTCGGCATCACTTTTAGGAGGCAGAGCTCTCTCGGTACAAAACCCTCAATTTCTCTTTCTTTTTAGTTAACCATCAGGGGAAGAAACGAGAATGATGATTGGTTCCTCTATTATAGAGTGAGATCACTCCATCTTGCTTCTTTTTCCCCCAGAGTGAGCAATCTTCCACATTTATCTAGAGAGGTATTTCAGCCCAAAGCTATGGATGCCTTCAATTCAACACTCCAGACAGCAGCTTAAGATGCAGCAACTTTCATGCAAGCTTGATTGTAACGAAAGAGAGGTGGTCGTGGGTAATGAGTGAGAAACAGAGAGAAAGAGAGAGTATGTGAGAGATATAGAAATTATGTTCATTTATTGAAAACAATCCCATGTCCCCACTTGACAGACACTGTGGTCATGAGCCTCTCCACCCTTCCCAGTTCAGTCTCAGCGAGACAAGTCTTTGGAGAGATGGAGAGAGTAAGTGCTTGAAAGTAACAAAGATGATGGAAAGAAAGAAAGGGAGGAAGATACACAAAGTAAGAGAAGGAGGACAAAGAACAGCCTGGGAGAGTAAAGCAGTGAGGGATACGCGTTCATCTCTTCATTTTCTGTCTTTTCTCCGCAGCTGTTTACTCCTCCTTCTCCTCTCCGTGTGTGATGACGTAGCAGATGTTCTTGTAGTCAACATTGCCAGCCACATCTGGGGGGAAGGCGGCCCACAGGTTCTTCATCCCTCTGCAGAGAACCTGTCGCACTGAGTGGTCAGAAGCTCCTCAAGGCTGGAATGAAAGAGAAAGAGTAGCAGTCAGAAATAGAAACGTTGATTTTTTATTTTTTTTTTTTCCACATGGGAATAAAATGTCAGTGAATATAGACTCACAATTGCTTCTTGATGGTGCCGGTGCCCTCTGGATCCAGCACCTTGAAGGCAGACACAATGACGTCTTCGGGGTCAGCACCTTTCAGAGACACAGAGAGCGAATTACACTAACTGAATGACTGAAAATCCAAAGGGAAGACGGACAGAACAAAAGGGACTTTTGCATACCCTTCAGCTTCTCTCCAAACATGGTGAGGAAAACAGTGAAGTTGATTGGGCCGCTGGCCTCCTTGATCATAGCCTCCAGCTCCTCATTCTTCACGTTCAGCTGACCTATGAGGCCAACACGTCCCTAAGGTCATCTTTGCTGATGATGCCGTCTCTGTTCTGGTCAATGATTGTGAAACCTCCTTGTACTCCTGAATCTGGCTCTGCTCAAACATGGAGAAGACGTTGGAGGAACCCTCTCCTCCACCTGCCCTCCTCTTAGCCTTTTTGGGCCATGCTGGGACGGTGTGAAGTCTAAGAAGCTCAAGAAGTGAAGACTGAAGCCGCGTAGTGACCTGTTCTCGAGAGGCTTATATACTGCCGAAGGCCCCCTTACTAATTATAGATCCAACCTTAAGTGTGGCTTGGGAAATAGCAGACAGAAAGAAGGAAACTATGAAAGGGGCGAGAGATGAGGTAGGGGGAAAGTGATGAAGGAACACAGGGTGGGATGCACTATCATCTTACAGTGCTCAGAAATAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311738 lncRNA upstream 126905 3998983 ~ 4002223 (+) True G274760
TU311717 lncRNA upstream 196724 3932068 ~ 3932404 (+) True G274748
TU311715 lncRNA upstream 206557 3922288 ~ 3922571 (+) True G274746
TU311711 lncRNA upstream 245371 3883537 ~ 3883757 (+) True G274743
TU311705 lncRNA upstream 255148 3873776 ~ 3873980 (+) True G274737
TU311634 lncRNA downstream 5752 4139130 ~ 4140762 (+) True G274671
TU311622 lncRNA downstream 7502 4140880 ~ 4141167 (+) True G274659
TU311632 lncRNA downstream 50824 4184202 ~ 4192064 (+) True G274669
TU311616 lncRNA downstream 88044 4221422 ~ 4370572 (+) True G274653
TU311755 lncRNA downstream 124066 4257444 ~ 4306259 (+) True G274775
CI01000069_04113962_04124908.mRNA mRNA upstream 3921 4113081 ~ 4125207 (+) True CI01000069_04113962_04124908
CI01000069_04089580_04103908.mRNA mRNA upstream 24469 4089580 ~ 4104659 (+) True CI01000069_04089580_04103908
CI01000069_04055396_04078361.mRNA mRNA upstream 50388 4055396 ~ 4078740 (+) True CI01000069_04055396_04078361
CI01000069_04047810_04052352.mRNA mRNA upstream 76482 4047576 ~ 4052646 (+) True CI01000069_04047810_04052352
CI01000069_04042802_04047285.mRNA mRNA upstream 81771 4042802 ~ 4047357 (+) True CI01000069_04042802_04047285
CI01000069_04143761_04147538.mRNA mRNA downstream 10383 4143761 ~ 4147679 (+) True CI01000069_04143761_04147538
CI01000069_04151875_04159107.mRNA mRNA downstream 18497 4151875 ~ 4159191 (+) True CI01000069_04151875_04159107
CI01000069_04165021_04170544.mRNA mRNA downstream 30750 4164128 ~ 4170555 (+) True CI01000069_04165021_04170544
CI01000069_04203202_04214241.mRNA mRNA downstream 69824 4203202 ~ 4214325 (+) True CI01000069_04203202_04214241
CI01000069_04230190_04235064.mRNA mRNA downstream 95991 4229369 ~ 4235081 (+) True CI01000069_04230190_04235064
TU311564 other upstream 325627 3800023 ~ 3803501 (+) True G274603
TU311499 other upstream 490698 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311230 other upstream 1234240 2892846 ~ 2892971 (+) True G274314
TU311181 other upstream 1447970 2672624 ~ 2681158 (+) True G274270
TU311015 other upstream 1956935 2112843 ~ 2172193 (+) True G274124
TU311605 other downstream 421931 4555309 ~ 4558480 (+) True CI01000069_04556116_04558002
TU311947 other downstream 791089 4924467 ~ 4926687 (+) True G274953
TU312063 other downstream 912849 5046227 ~ 5048990 (+) True CI01000069_05046565_05048523

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051612 True 1471 mRNA 0.48 7 NC_007114.7 32813048 ~ 32818607 (-)
tiger barb (Puntius tetrazona) TU28700 False 1554 lncRNA 0.47 7 NC_056701.1 12246208 ~ 12249997 (+)