RNA id: TU29141


Basic Information

Item Value
RNA id TU29141
length 2883
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G19575
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12682818 ~ 12686371 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGTAAAGGTGCGATGTGAGGTCTAAATATAGGCGAATAAGGCACTGATTAATCTCAGTAATACATTCCTAAGAATGTAGTTCTCAAAGAAAGAATGACAACAAACGCTAATAACGCTCAACTAGCAAGGGGAGACATGAAAGTCGGATGTTTACATCCTCAAGGACAATATACTCACCGGCTGTGGACACGTTTAAACCTACGGTCTCAAAAGGAGAGCCACGGACTTACCAGTTTCGTCAGTTATGCTACATACAGGACTCGCGCGAGCGGGATTGTGCGTGATATTATGTTAGTGAATGCTACATACATCGTCTAATTTGCACATGCTGCAAAGTTGGACTCTTTCGGCAGCGTGTCTGTGTATGCCGAGTCATTCCACAGAGGATCTGCCTCGTAAAGAAGACGGAGATGGCGATGGTCGTATGGGCCGAAAGGACACAAAGATTAGTGGGACACAAGAGACAAGTTTTGGCAGAAAAGGCCCGGTCATTGTTTCACCCATGCAATTTGATTGGCTGTGTTACATGTTCCTGTGCAGTTTGATTGGCTGTGTTACATTTCCTGAACACAGAACGGTGCACCATCGGTGACAGACACATAGTACTACTCTCAGTGTACAGCTCATTGACATAAACATGAAACAGAAAAAGGTGAGACTGACAGAGCCAGAACCACTGGCTGCAGAACAATGTGGATCACAGCGCCATCTGCTGATCTAGTAGAGGTAGTGGAGCTCAGTTACCTTCTCACCGCGCATTAAAATGTCTTGGGAATTTTTTTTAGGTCAgtttaaagcagtggttctcaatctGTAATAtcttaaatctatttaaatatattatttaatttatagataattttaataaataattttaatactttcaataatttaatttcaataaaatcatcatttaataTATCGTTTTTGGGGGCTAAGAACCACTGGTTtaaaagtaagaaaaacaagtctaaaaagatcattataaaaataatttaaacaaataaattaaatcatctttaaaaatgaatattattattaaaagagtgaatgtaaataaataaaaaagaatttgaTGCCAACCTAACCAATCCTTGTTTACCTAGCTAATATCTAAATGCTCTTTAAAGATGTATATAACACGTTTATAGCAATATAGTCGATAACTAGTCAGCTCTTCctctactttcttttttttccgtcTTGATAAAAAGTGTTCACAGTTACAGAGACTCGAGATCAGATGCATGCTTCAAACTGTCATTAACGCTCAATGATATGGCTGAGAAAGTGTTTCCATGGAAACATCCGAAGTCGTCGTGCTACCGAGGACGTCGGCTGAAGGTCAGATGGGTTTCTGTCTTGGCCCATAATGGATCACTATCACAGAGCTCCACACACCATCTACACAAAACTCACACAAAAACAAGTATGGCGATACAAAGAGCAGCTGagtcaaatacaaaaacagGATTTCCAAGGGATTTATTTTCTGGGAGTTCAAACAAAGCTGGGCAGTGCAACAGAAGATTCAAACTCCAATGTTTCCAATGAGAAGCAGAAGACGAAGCCGTAGAAGAAGAAAGAGTGAggagcttttcatttttttctctcctattattattattattattattctttttttttgtttgtgattcTTCTTTCTTGCGTTTGGGGGTCTGAAGTGCAGGGTGGGCTTTCCCGTTTTAGTTCAGGTGAGTTCACCACCGCCCATCTCCAACTTCACCCACAACTTACCCACACGGGCGAACGCCTCCCCCTCACTGGGATGATTATTAACAGTAAACACGGATGATAAAACTCATCGATATTTCCCAGCATCTGGACTGATTTTTGCAATAAACGAATCTCCAGTCAAGTTCAGCGAAATAAAAAGTGATCCAcctcctttttttgtttgtttgtttgtttgtttgtttgtttgcaatcGAGTGCTAAAGAGTTTATAGCCTCTCTTTTCCGGAGGGACTGCGTGAAATGtccttggggaaaaaaaagttcagaCATTCCTCCTCCTtatcaaaacatatttgaattCTTCAGAAAAAAGGCTAAGAACAGGATTTCGTATTCGTAAGTCTTCGTATTCACTGCCAGCGGTCCGTCGCTTTGAGGGAAACACTCGGCAGCAGAGGAATCggaaaagaaatgagaaatagaaagaaaggAATCATGCCTTGATTTCCCCTGTGGACATTCAGCGCACTGCCTAGTGTTTCCCCGGACAAAGTATCGCTTCAGGACTCAGCCCTCCCCGTCCCAGAGGCTAGCACCAGTCGTCCTCATCAGTCTCACTGTAGGGTTCGTGGAGGCCCTTCCTGGGCCCTCTGGGATGAGGAGGCTTATGAGTTCCCGGGTGGGCTGGGGTGTGGTGGTGGGGCGAGGGCGAGGACGAGCGGTAGCCGTTTGGCATGCGCCTCGGATGTGACTGGCCCTGAGGGGGGGTGCTGTGGCGGGAAGTCCTGGGGGAATGTGGGTGAGGGTTGCCCTGCACCGGGCTCTGCTCGTAGGACGGAGGCTCGTGGTGATTGAACTCGTAGTCTTGGTCGTCGTAGAAACCGTCGCCCTCCACGCTCTCCGTGGGGCCAGGGCCCCAGTGCGCGTGACGGGCCGAGCGAGGAGAGCCGTGGTGGGGAGGGGGAAGCGGGGGCTCGGGGCCGGGCGGGCTGAACCGACGAGAGGTCGGGGTGGGGAGTCGGTTCTGCTGGCCCGGAGGGGGTGCCGCCAATGGGCTTACGGACCACGGGAGAGTAGGTGACGTGGGGTCGGGGCGTAGCGGGGTTTGGGGAAGCTGACGCCGGCCGCGGCGGGGCGTGCTGGTCCCAGAGGTGGAGGGGACTGGACTGCCGCTTACTGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29145 lncRNA upstream 1253 12681258 ~ 12681565 (+) True G19579
TU28784 lncRNA upstream 169097 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 169097 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 432821 12246208 ~ 12249997 (+) False LOC122341822
TU28736 lncRNA upstream 454298 12227935 ~ 12228520 (+) True G19287
TU29234 lncRNA downstream 310846 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 319439 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 373789 13060160 ~ 13061606 (+) True G19627
TU29211 lncRNA downstream 374746 13061117 ~ 13072599 (+) True G19636
TU29199 lncRNA downstream 385762 13072133 ~ 13076694 (+) True G19624
XM_043228192.1 mRNA upstream 3061 12678396 ~ 12679757 (+) True ier2a
XM_043225909.1 mRNA upstream 6155 12661681 ~ 12676663 (+) False LOC122329583
XM_043235716.1 mRNA downstream 84201 12770572 ~ 12772182 (+) True alkbh7
XM_043229474.1 mRNA downstream 208955 12895326 ~ 12900216 (+) True LOC122332168
XM_043229415.1 mRNA downstream 286106 12972477 ~ 12974627 (+) True LOC122332118
XM_043234624.1 mRNA downstream 416905 13103276 ~ 13107847 (+) True aldh3b1
XM_043234628.1 mRNA downstream 426106 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XR_006250478.1 other upstream 154015 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 169097 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 169097 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 369828 12303364 ~ 12312990 (+) False nbr1b
TU28690 other upstream 581966 12092603 ~ 12100852 (+) True LOC122342134
TU29192 other downstream 149010 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other downstream 200786 12887157 ~ 12888061 (+) False LOC122332158
TU29613 other downstream 1012203 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 1227252 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1363119 14049490 ~ 14053032 (+) True G19973

Expression Profile